Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773721

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773721


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M348Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 2.5850 0.0000
2 ENSG00000207145 SNORA18 small nucleolar RNA, H/ACA box 18 2.3219 0.0000
3 ENSG00000239195 SNORD5 small nucleolar RNA, C/D box 5 2.3219 0.0000
4 ENSG00000284458 MIR1304 microRNA 1304 2.3219 0.0000
5 ENSG00000202431 RNU6-438P RNA, U6 small nuclear 438, pseudogene 2.0000 0.0023
6 ENSG00000242186 pseudogene similar to part of taxol resistance associated gene 3 2.0000 0.0023
8 ENSG00000254252 RPL7P20 ribosomal protein L7 pseudogene 20 1.7233 0.0000
9 ENSG00000279511 TEC 1.7233 0.0000
10 ENSG00000206598 RNU6-1286P RNA, U6 small nuclear 1286, pseudogene 1.5850 0.0173
63119 ENSG00000242326 MCUR1P2 MCUR1 pseudogene 2 -1.7925 0.3785

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000280353 TEC -1.7930 0.0000
63127 ENSG00000231694 melanoma antigen family A, 11 (MAGEA11) pseudogene -1.7930 0.0000
63126 ENSG00000259802 novel transcript, antisense to MARCH6 -1.7929 0.0000
63125 ENSG00000260493 novel transcript, antisense to E2F5 -1.7929 0.0001
63124 ENSG00000104497 SNX16 sorting nexin 16 -1.7928 0.0000
63123 ENSG00000244748 RN7SL153P RNA, 7SL, cytoplasmic 153, pseudogene -1.7928 0.0000
63122 ENSG00000279726 novel transcript, antisense to PCDHA5, PCDHA4, PCDHA3, PCDHA2 and PCDHA1 -1.7925 0.0000
63121 ENSG00000278085 CT45A8 cancer/testis antigen family 45 member A8 -1.7925 1.0000
63120 ENSG00000276782 Metazoan signal recognition particle RNA -1.7925 1.0000
63119 ENSG00000242326 MCUR1P2 MCUR1 pseudogene 2 -1.7925 0.3785

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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