SHOGoiN Cell Methylome: GSM2773721

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773721


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M348Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 2.5850 0.0000
2 ENSG00000207145 SNORA18 small nucleolar RNA, H/ACA box 18 2.3219 0.0000
3 ENSG00000239195 SNORD5 small nucleolar RNA, C/D box 5 2.3219 0.0000
4 ENSG00000284458 MIR1304 microRNA 1304 2.3219 0.0000
5 ENSG00000202431 RNU6-438P RNA, U6 small nuclear 438, pseudogene 2.0000 0.0023
6 ENSG00000242186 pseudogene similar to part of taxol resistance associated gene 3 2.0000 0.0023
8 ENSG00000254252 RPL7P20 ribosomal protein L7 pseudogene 20 1.7233 0.0000
9 ENSG00000279511 TEC 1.7233 0.0000
10 ENSG00000206598 RNU6-1286P RNA, U6 small nuclear 1286, pseudogene 1.5850 0.0173
63332 ENSG00000111196 MAGOHB mago homolog B, exon junction complex subunit -1.8568 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000152430 BOLL boule homolog, RNA binding protein -1.8583 0.0000
63340 ENSG00000123144 TRIR telomerase RNA component interacting RNase -1.8582 0.0000
63339 ENSG00000231219 PRAMEF32P PRAME family member 32, pseudogene -1.8581 0.0635
63338 ENSG00000204060 FOXO6 forkhead box O6 -1.8581 0.0000
63337 ENSG00000263887 ubiquitin specific peptidase 32 (USP32) pseudogene -1.8578 0.0002
63336 ENSG00000271882 novel transcript -1.8578 0.0000
63335 ENSG00000262296 novel transcript, antisense to USP43 -1.8573 0.0000
63334 ENSG00000167925 GHDC GH3 domain containing -1.8572 0.0000
63333 ENSG00000204022 LIPJ lipase family member J -1.8570 0.0000
63332 ENSG00000111196 MAGOHB mago homolog B, exon junction complex subunit -1.8568 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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