SHOGoiN Cell Methylome: GSM2773722
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773722 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M349 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000247877 | novel transcript | 2.3219 | 0.0004 | |
| 2 | ENSG00000226341 | MTCYBP39 | MT-CYB pseudogene 39 | 2.0000 | 0.0000 |
| 3 | ENSG00000234145 | NAP1L4P3 | nucleosome assembly protein 1 like 4 pseudogene 3 | 2.0000 | 0.0027 |
| 5 | ENSG00000255531 | NDUFS5P6 | NADH:ubiquinone oxidoreductase subunit S5 pseudogene 6 | 2.0000 | 0.0000 |
| 6 | ENSG00000282993 | TEC | 2.0000 | 0.0027 | |
| 7 | ENSG00000248237 | protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform (PPP2R2C) pseudogene | 1.7233 | 0.0000 | |
| 8 | ENSG00000169488 | OR4K15 | olfactory receptor family 4 subfamily K member 15 | 1.5850 | 0.0004 |
| 9 | ENSG00000181819 | KCTD9P2 | potassium channel tetramerization domain containing 9 pseudogene 2 | 1.5850 | 0.0194 |
| 10 | ENSG00000201957 | NA | 1.5850 | 0.0000 | |
| 63332 | ENSG00000270889 | protein phosphatase 1, regulatory (inhibitor) subunit 14B (PPP1R14B) pseudogene | -1.7720 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000120055 | C10orf95 | chromosome 10 open reading frame 95 | -1.7729 | 0.0000 |
| 63340 | ENSG00000226094 | RPL7P3 | ribosomal protein L7 pseudogene 3 | -1.7728 | 0.0000 |
| 63339 | ENSG00000171126 | KCNG3 | potassium voltage-gated channel modifier subfamily G member 3 | -1.7728 | 0.0000 |
| 63338 | ENSG00000178163 | ZNF518B | zinc finger protein 518B | -1.7727 | 0.0000 |
| 63337 | ENSG00000265293 | ARGFXP2 | arginine-fifty homeobox pseudogene 2 | -1.7724 | 0.0000 |
| 63336 | ENSG00000196453 | ZNF777 | zinc finger protein 777 | -1.7723 | 0.0000 |
| 63335 | ENSG00000243378 | phospholipase A2, group X (PLA2G10) pseudogene | -1.7722 | 0.0000 | |
| 63334 | ENSG00000247970 | novel transcript | -1.7721 | 0.0000 | |
| 63333 | ENSG00000204519 | ZNF551 | zinc finger protein 551 | -1.7720 | 0.0000 |
| 63332 | ENSG00000270889 | protein phosphatase 1, regulatory (inhibitor) subunit 14B (PPP1R14B) pseudogene | -1.7720 | 0.0000 |
