Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773722

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773722 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M349	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000247877		novel transcript	2.3219	0.0004
2	ENSG00000226341	MTCYBP39	MT-CYB pseudogene 39	2.0000	0.0000
3	ENSG00000234145	NAP1L4P3	nucleosome assembly protein 1 like 4 pseudogene 3	2.0000	0.0027
5	ENSG00000255531	NDUFS5P6	NADH:ubiquinone oxidoreductase subunit S5 pseudogene 6	2.0000	0.0000
6	ENSG00000282993		TEC	2.0000	0.0027
7	ENSG00000248237		protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform (PPP2R2C) pseudogene	1.7233	0.0000
8	ENSG00000169488	OR4K15	olfactory receptor family 4 subfamily K member 15	1.5850	0.0004
9	ENSG00000181819	KCTD9P2	potassium channel tetramerization domain containing 9 pseudogene 2	1.5850	0.0194
10	ENSG00000201957		NA	1.5850	0.0000
63119	ENSG00000267909	CCDC177	coiled-coil domain containing 177	-1.7170	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000266951		novel transcript	-1.7190	0.0007
63127	ENSG00000185863	TMEM210	transmembrane protein 210	-1.7186	0.0000
63126	ENSG00000183628	DGCR6	DiGeorge syndrome critical region gene 6	-1.7182	0.0000
63125	ENSG00000264012		novel transcript, antisense to GATA6	-1.7179	0.0000
63124	ENSG00000283726	MIR5193	microRNA 5193	-1.7179	0.0000
63123	ENSG00000101230	ISM1	isthmin 1	-1.7176	0.0000
63122	ENSG00000229788	LINC00388	long intergenic non-protein coding RNA 388	-1.7174	0.0000
63121	ENSG00000283474	MIR6828	microRNA 6828	-1.7173	0.0000
63120	ENSG00000170515	PA2G4	proliferation-associated 2G4	-1.7171	0.0000
63119	ENSG00000267909	CCDC177	coiled-coil domain containing 177	-1.7170	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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