Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773722

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773722


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M349Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000247877 novel transcript 2.3219 0.0004
2 ENSG00000226341 MTCYBP39 MT-CYB pseudogene 39 2.0000 0.0000
3 ENSG00000234145 NAP1L4P3 nucleosome assembly protein 1 like 4 pseudogene 3 2.0000 0.0027
5 ENSG00000255531 NDUFS5P6 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 6 2.0000 0.0000
6 ENSG00000282993 TEC 2.0000 0.0027
7 ENSG00000248237 protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform (PPP2R2C) pseudogene 1.7233 0.0000
8 ENSG00000169488 OR4K15 olfactory receptor family 4 subfamily K member 15 1.5850 0.0004
9 ENSG00000181819 KCTD9P2 potassium channel tetramerization domain containing 9 pseudogene 2 1.5850 0.0194
10 ENSG00000201957 NA 1.5850 0.0000
63119 ENSG00000267909 CCDC177 coiled-coil domain containing 177 -1.7170 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000266951 novel transcript -1.7190 0.0007
63127 ENSG00000185863 TMEM210 transmembrane protein 210 -1.7186 0.0000
63126 ENSG00000183628 DGCR6 DiGeorge syndrome critical region gene 6 -1.7182 0.0000
63125 ENSG00000264012 novel transcript, antisense to GATA6 -1.7179 0.0000
63124 ENSG00000283726 MIR5193 microRNA 5193 -1.7179 0.0000
63123 ENSG00000101230 ISM1 isthmin 1 -1.7176 0.0000
63122 ENSG00000229788 LINC00388 long intergenic non-protein coding RNA 388 -1.7174 0.0000
63121 ENSG00000283474 MIR6828 microRNA 6828 -1.7173 0.0000
63120 ENSG00000170515 PA2G4 proliferation-associated 2G4 -1.7171 0.0000
63119 ENSG00000267909 CCDC177 coiled-coil domain containing 177 -1.7170 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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