Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773722
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773722
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M349
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000247877
novel transcript
2.3219
0.0004
2
ENSG00000226341
MTCYBP39
MT-CYB pseudogene 39
2.0000
0.0000
3
ENSG00000234145
NAP1L4P3
nucleosome assembly protein 1 like 4 pseudogene 3
2.0000
0.0027
5
ENSG00000255531
NDUFS5P6
NADH:ubiquinone oxidoreductase subunit S5 pseudogene 6
2.0000
0.0000
6
ENSG00000282993
TEC
2.0000
0.0027
7
ENSG00000248237
protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform (PPP2R2C) pseudogene
1.7233
0.0000
8
ENSG00000169488
OR4K15
olfactory receptor family 4 subfamily K member 15
1.5850
0.0004
9
ENSG00000181819
KCTD9P2
potassium channel tetramerization domain containing 9 pseudogene 2
1.5850
0.0194
10
ENSG00000201957
NA
1.5850
0.0000
63119
ENSG00000267909
CCDC177
coiled-coil domain containing 177
-1.7170
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000266951
novel transcript
-1.7190
0.0007
63127
ENSG00000185863
TMEM210
transmembrane protein 210
-1.7186
0.0000
63126
ENSG00000183628
DGCR6
DiGeorge syndrome critical region gene 6
-1.7182
0.0000
63125
ENSG00000264012
novel transcript, antisense to GATA6
-1.7179
0.0000
63124
ENSG00000283726
MIR5193
microRNA 5193
-1.7179
0.0000
63123
ENSG00000101230
ISM1
isthmin 1
-1.7176
0.0000
63122
ENSG00000229788
LINC00388
long intergenic non-protein coding RNA 388
-1.7174
0.0000
63121
ENSG00000283474
MIR6828
microRNA 6828
-1.7173
0.0000
63120
ENSG00000170515
PA2G4
proliferation-associated 2G4
-1.7171
0.0000
63119
ENSG00000267909
CCDC177
coiled-coil domain containing 177
-1.7170
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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