Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773723

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773723


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M350Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204020 LIPN lipase family member N 2.5850 0.0000
2 ENSG00000254650 MTCYBP41 MT-CYB pseudogene 41 2.3219 0.0000
3 ENSG00000255022 mitochondrially encoded NADH dehydrogenase 6 (MT-ND6) pseudogene 2.3219 0.0000
4 ENSG00000279793 novel transcript 2.3219 0.0000
5 ENSG00000227847 PPIAP93 PPIA pseudogene 93 2.0763 0.0000
6 ENSG00000230213 OR8V1P olfactory receptor family 8 subfamily V member 1 pseudogene 2.0000 0.0008
7 ENSG00000232139 LINC00867 long intergenic non-protein coding RNA 867 2.0000 0.0008
8 ENSG00000234538 ZNF114P1 zinc finger protein 114 pseudogene 1 2.0000 0.0008
9 ENSG00000249351 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 (AGAP1) pseudogene 2.0000 0.0008
10 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.0000 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000174684 B4GAT1 beta-1,4-glucuronyltransferase 1 -1.8500 0.0000
63127 ENSG00000260790 CDR2-DT CDR2 divergent transcript -1.8499 0.0000
63126 ENSG00000171421 MRPL36 mitochondrial ribosomal protein L36 -1.8499 0.0000
63125 ENSG00000086159 AQP6 aquaporin 6 -1.8492 0.0000
63124 ENSG00000169714 CNBP CCHC-type zinc finger nucleic acid binding protein -1.8491 0.0008
63123 ENSG00000214534 ZNF705E zinc finger protein 705E -1.8490 0.0005
63122 ENSG00000251046 ZNF969P zinc finger protein 969, pseudogene -1.8490 0.0010
63121 ENSG00000242082 SLC5A4-AS1 SLC5A4 antisense RNA 1 -1.8481 0.0000
63120 ENSG00000274805 MIR6768 microRNA 6768 -1.8479 0.0000
63119 ENSG00000265304 MIR3650 microRNA 3650 -1.8469 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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