SHOGoiN Cell Methylome: GSM2773723

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773723


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M350Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204020 LIPN lipase family member N 2.5850 0.0000
2 ENSG00000254650 MTCYBP41 MT-CYB pseudogene 41 2.3219 0.0000
3 ENSG00000255022 mitochondrially encoded NADH dehydrogenase 6 (MT-ND6) pseudogene 2.3219 0.0000
4 ENSG00000279793 novel transcript 2.3219 0.0000
5 ENSG00000227847 peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene 2.0763 0.0000
6 ENSG00000230213 OR8V1P olfactory receptor family 8 subfamily V member 1 pseudogene 2.0000 0.0008
7 ENSG00000232139 LINC00867 long intergenic non-protein coding RNA 867 2.0000 0.0008
8 ENSG00000234538 ZNF114P1 zinc finger protein 114 pseudogene 1 2.0000 0.0008
9 ENSG00000249351 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 (AGAP1) pseudogene 2.0000 0.0008
10 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.0000 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000276573 novel transcript, sense intronic to RAP2A -1.9130 0.0000
63340 ENSG00000265623 MIR3139 microRNA 3139 -1.9125 0.0000
63339 ENSG00000144485 HES6 hes family bHLH transcription factor 6 -1.9116 0.0000
63338 ENSG00000267783 novel transcript, antisense to ASF1B -1.9107 0.0000
63337 ENSG00000103035 PSMD7 proteasome 26S subunit, non-ATPase 7 -1.9106 0.0000
63336 ENSG00000142684 ZNF593 zinc finger protein 593 -1.9099 0.0000
63335 ENSG00000246790 novel transcript, antisense to SORL1 -1.9098 0.0000
63334 ENSG00000228983 SLC47A1P1 SLC47A1 pseudogene 1 -1.9086 0.0000
63333 ENSG00000282872 C1orf232 chromosome 1 open reading frame 230 -1.9086 0.0000
63332 ENSG00000224536 novel transcript -1.9086 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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