Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773724

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773724


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M351Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230790 novel transcript 5.0414 0.0000
2 ENSG00000132017 DCAF15 DDB1 and CUL4 associated factor 15 4.9542 0.0000
3 ENSG00000108773 KAT2A lysine acetyltransferase 2A 3.9258 0.0000
4 ENSG00000260325 HSPB9 heat shock protein family B (small) member 9 3.9258 0.0000
5 ENSG00000013810 TACC3 transforming acidic coiled-coil containing protein 3 3.8767 0.0000
6 ENSG00000131379 C3orf20 chromosome 3 open reading frame 20 3.8571 0.0000
7 ENSG00000235139 novel transcript 3.8108 0.0000
8 ENSG00000179270 PCARE photoreceptor cilium actin regulator 3.8074 0.0000
9 ENSG00000225117 ARSDP1 arylsulfatase D pseudogene 1 3.7405 0.0000
10 ENSG00000262248 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor pseudogene 3.7067 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000263627 PPP4R1-AS1 PPP4R1 antisense RNA 1 -2.0211 0.0000
63127 ENSG00000154845 PPP4R1 protein phosphatase 4 regulatory subunit 1 -2.0211 0.0000
63126 ENSG00000278359 MIR7155 microRNA 7155 -2.0196 0.0000
63125 ENSG00000181026 AEN apoptosis enhancing nuclease -2.0181 0.0000
63124 ENSG00000180354 MTURN maturin, neural progenitor differentiation regulator homolog -2.0177 0.0000
63123 ENSG00000226647 novel transcript -2.0166 0.0000
63122 ENSG00000166165 CKB creatine kinase B -2.0157 0.0000
63121 ENSG00000153391 INO80C INO80 complex subunit C -2.0156 0.0000
63120 ENSG00000272622 novel transcript -2.0154 0.0000
63119 ENSG00000142794 NBPF3 NBPF member 3 -2.0145 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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