SHOGoiN Cell Methylome: GSM2773724

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773724


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M351Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230790 novel transcript 5.0414 0.0000
2 ENSG00000132017 DCAF15 DDB1 and CUL4 associated factor 15 4.9542 0.0000
3 ENSG00000108773 KAT2A lysine acetyltransferase 2A 3.9258 0.0000
4 ENSG00000260325 HSPB9 heat shock protein family B (small) member 9 3.9258 0.0000
5 ENSG00000013810 TACC3 transforming acidic coiled-coil containing protein 3 3.8767 0.0000
6 ENSG00000131379 C3orf20 chromosome 3 open reading frame 20 3.8571 0.0000
7 ENSG00000235139 novel transcript 3.8108 0.0000
8 ENSG00000179270 PCARE photoreceptor cilium actin regulator 3.8074 0.0000
9 ENSG00000225117 ARSDP1 arylsulfatase D pseudogene 1 3.7405 0.0000
10 ENSG00000262248 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor pseudogene 3.7067 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000112210 RAB23 RAB23, member RAS oncogene family -2.2557 0.0000
63340 ENSG00000101997 CCDC22 coiled-coil domain containing 22 -2.2554 0.0000
63339 ENSG00000165752 STK32C serine/threonine kinase 32C -2.2533 0.0000
63338 ENSG00000273230 novel transcript -2.2504 0.0000
63337 ENSG00000213626 LBH limb bud and heart development -2.2487 0.0000
63336 ENSG00000177324 BEND2 BEN domain containing 2 -2.2468 0.0000
63335 ENSG00000185482 STAC3 SH3 and cysteine rich domain 3 -2.2458 0.0000
63334 ENSG00000198910 L1CAM L1 cell adhesion molecule -2.2427 0.0000
63333 ENSG00000203875 SNHG5 small nucleolar RNA host gene 5 -2.2414 0.0000
63332 ENSG00000198807 PAX9 paired box 9 -2.2404 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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