SHOGoiN Cell Methylome: GSM2773724
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773724 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M351 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000230790 | novel transcript | 5.0414 | 0.0000 | |
| 2 | ENSG00000132017 | DCAF15 | DDB1 and CUL4 associated factor 15 | 4.9542 | 0.0000 |
| 3 | ENSG00000108773 | KAT2A | lysine acetyltransferase 2A | 3.9258 | 0.0000 |
| 4 | ENSG00000260325 | HSPB9 | heat shock protein family B (small) member 9 | 3.9258 | 0.0000 |
| 5 | ENSG00000013810 | TACC3 | transforming acidic coiled-coil containing protein 3 | 3.8767 | 0.0000 |
| 6 | ENSG00000131379 | C3orf20 | chromosome 3 open reading frame 20 | 3.8571 | 0.0000 |
| 7 | ENSG00000235139 | novel transcript | 3.8108 | 0.0000 | |
| 8 | ENSG00000179270 | PCARE | photoreceptor cilium actin regulator | 3.8074 | 0.0000 |
| 9 | ENSG00000225117 | ARSDP1 | arylsulfatase D pseudogene 1 | 3.7405 | 0.0000 |
| 10 | ENSG00000262248 | pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor pseudogene | 3.7067 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000112210 | RAB23 | RAB23, member RAS oncogene family | -2.2557 | 0.0000 |
| 63340 | ENSG00000101997 | CCDC22 | coiled-coil domain containing 22 | -2.2554 | 0.0000 |
| 63339 | ENSG00000165752 | STK32C | serine/threonine kinase 32C | -2.2533 | 0.0000 |
| 63338 | ENSG00000273230 | novel transcript | -2.2504 | 0.0000 | |
| 63337 | ENSG00000213626 | LBH | limb bud and heart development | -2.2487 | 0.0000 |
| 63336 | ENSG00000177324 | BEND2 | BEN domain containing 2 | -2.2468 | 0.0000 |
| 63335 | ENSG00000185482 | STAC3 | SH3 and cysteine rich domain 3 | -2.2458 | 0.0000 |
| 63334 | ENSG00000198910 | L1CAM | L1 cell adhesion molecule | -2.2427 | 0.0000 |
| 63333 | ENSG00000203875 | SNHG5 | small nucleolar RNA host gene 5 | -2.2414 | 0.0000 |
| 63332 | ENSG00000198807 | PAX9 | paired box 9 | -2.2404 | 0.0000 |
