Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773724
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773724
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M351
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000230790
novel transcript
5.0414
0.0000
2
ENSG00000132017
DCAF15
DDB1 and CUL4 associated factor 15
4.9542
0.0000
3
ENSG00000108773
KAT2A
lysine acetyltransferase 2A
3.9258
0.0000
4
ENSG00000260325
HSPB9
heat shock protein family B (small) member 9
3.9258
0.0000
5
ENSG00000013810
TACC3
transforming acidic coiled-coil containing protein 3
3.8767
0.0000
6
ENSG00000131379
C3orf20
chromosome 3 open reading frame 20
3.8571
0.0000
7
ENSG00000235139
novel transcript
3.8108
0.0000
8
ENSG00000179270
PCARE
photoreceptor cilium actin regulator
3.8074
0.0000
9
ENSG00000225117
ARSDP1
arylsulfatase D pseudogene 1
3.7405
0.0000
10
ENSG00000262248
pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor pseudogene
3.7067
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000263627
PPP4R1-AS1
PPP4R1 antisense RNA 1
-2.0211
0.0000
63127
ENSG00000154845
PPP4R1
protein phosphatase 4 regulatory subunit 1
-2.0211
0.0000
63126
ENSG00000278359
MIR7155
microRNA 7155
-2.0196
0.0000
63125
ENSG00000181026
AEN
apoptosis enhancing nuclease
-2.0181
0.0000
63124
ENSG00000180354
MTURN
maturin, neural progenitor differentiation regulator homolog
-2.0177
0.0000
63123
ENSG00000226647
novel transcript
-2.0166
0.0000
63122
ENSG00000166165
CKB
creatine kinase B
-2.0157
0.0000
63121
ENSG00000153391
INO80C
INO80 complex subunit C
-2.0156
0.0000
63120
ENSG00000272622
novel transcript
-2.0154
0.0000
63119
ENSG00000142794
NBPF3
NBPF member 3
-2.0145
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...