Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773724

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773724 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M351	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000230790		novel transcript	5.0414	0.0000
2	ENSG00000132017	DCAF15	DDB1 and CUL4 associated factor 15	4.9542	0.0000
3	ENSG00000108773	KAT2A	lysine acetyltransferase 2A	3.9258	0.0000
4	ENSG00000260325	HSPB9	heat shock protein family B (small) member 9	3.9258	0.0000
5	ENSG00000013810	TACC3	transforming acidic coiled-coil containing protein 3	3.8767	0.0000
6	ENSG00000131379	C3orf20	chromosome 3 open reading frame 20	3.8571	0.0000
7	ENSG00000235139		novel transcript	3.8108	0.0000
8	ENSG00000179270	PCARE	photoreceptor cilium actin regulator	3.8074	0.0000
9	ENSG00000225117	ARSDP1	arylsulfatase D pseudogene 1	3.7405	0.0000
10	ENSG00000262248		pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor pseudogene	3.7067	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000263627	PPP4R1-AS1	PPP4R1 antisense RNA 1	-2.0211	0.0000
63127	ENSG00000154845	PPP4R1	protein phosphatase 4 regulatory subunit 1	-2.0211	0.0000
63126	ENSG00000278359	MIR7155	microRNA 7155	-2.0196	0.0000
63125	ENSG00000181026	AEN	apoptosis enhancing nuclease	-2.0181	0.0000
63124	ENSG00000180354	MTURN	maturin, neural progenitor differentiation regulator homolog	-2.0177	0.0000
63123	ENSG00000226647		novel transcript	-2.0166	0.0000
63122	ENSG00000166165	CKB	creatine kinase B	-2.0157	0.0000
63121	ENSG00000153391	INO80C	INO80 complex subunit C	-2.0156	0.0000
63120	ENSG00000272622		novel transcript	-2.0154	0.0000
63119	ENSG00000142794	NBPF3	NBPF member 3	-2.0145	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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