SHOGoiN Cell Methylome: GSM2773725
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773725 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M352 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000244025 | KRTAP19-3 | keratin associated protein 19-3 | 2.5850 | 0.0000 |
| 2 | ENSG00000255565 | novel transcript | 2.5850 | 0.0000 | |
| 3 | ENSG00000255380 | novel pseudogene containing a Zinc finger, C2H2 type domain | 2.3219 | 0.0003 | |
| 4 | ENSG00000134545 | KLRC1 | killer cell lectin like receptor C1 | 2.0000 | 0.0024 |
| 5 | ENSG00000206923 | RNU6-432P | RNA, U6 small nuclear 432, pseudogene | 2.0000 | 0.0024 |
| 6 | ENSG00000224104 | SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2) pseudogene | 2.0000 | 0.0024 | |
| 7 | ENSG00000226625 | RBM17P1 | RNA binding motif protein 17 pseudogene 1 | 2.0000 | 0.0000 |
| 8 | ENSG00000226640 | novel transcript | 2.0000 | 0.0024 | |
| 9 | ENSG00000227016 | novel transcript | 2.0000 | 0.0024 | |
| 10 | ENSG00000241648 | CADM2-AS2 | CADM2 antisense RNA 2 | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000130054 | FAM155B | family with sequence similarity 155 member B | -1.7959 | 0.0000 |
| 63340 | ENSG00000165379 | LRFN5 | leucine rich repeat and fibronectin type III domain containing 5 | -1.7957 | 0.0000 |
| 63339 | ENSG00000276118 | transmembrane protein 128 (TMEM128) pseudogene | -1.7955 | 0.0116 | |
| 63338 | ENSG00000249955 | novel transcript | -1.7955 | 0.0004 | |
| 63337 | ENSG00000005022 | SLC25A5 | solute carrier family 25 member 5 | -1.7954 | 0.0000 |
| 63336 | ENSG00000159110 | IFNAR2 | interferon alpha and beta receptor subunit 2 | -1.7954 | 0.0000 |
| 63335 | ENSG00000233875 | novel transcript | -1.7952 | 0.0000 | |
| 63334 | ENSG00000135925 | WNT10A | Wnt family member 10A | -1.7944 | 0.0000 |
| 63333 | ENSG00000133858 | ZFC3H1 | zinc finger C3H1-type containing | -1.7939 | 0.0000 |
| 63332 | ENSG00000251284 | speckle-type POZ protein-like (SPOPL) pseudogene | -1.7938 | 0.0760 |
