Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773725

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773725 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M352	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000244025	KRTAP19-3	keratin associated protein 19-3	2.5850	0.0000
2	ENSG00000255565		novel transcript	2.5850	0.0000
3	ENSG00000255380		novel pseudogene containing a Zinc finger, C2H2 type domain	2.3219	0.0003
4	ENSG00000134545	KLRC1	killer cell lectin like receptor C1	2.0000	0.0024
5	ENSG00000206923	RNU6-432P	RNA, U6 small nuclear 432, pseudogene	2.0000	0.0024
6	ENSG00000224104		SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2) pseudogene	2.0000	0.0024
7	ENSG00000226625	RBM17P1	RNA binding motif protein 17 pseudogene 1	2.0000	0.0000
8	ENSG00000226640		novel transcript	2.0000	0.0024
9	ENSG00000227016	LINC02796	long intergenic non-protein coding RNA 2796	2.0000	0.0024
10	ENSG00000241648	CADM2-AS2	CADM2 antisense RNA 2	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000270372		novel transcript	-1.7464	0.0031
63127	ENSG00000263107		solute carrier family 47, member 1 (SLC47A1) pseudogene	-1.7463	0.0000
63126	ENSG00000151834	GABRA2	gamma-aminobutyric acid type A receptor subunit alpha2	-1.7462	0.0000
63125	ENSG00000279160		TEC	-1.7461	0.0000
63124	ENSG00000213626	LBH	LBH regulator of WNT signaling pathway	-1.7458	0.0000
63123	ENSG00000100226	GTPBP1	GTP binding protein 1	-1.7457	0.0000
63122	ENSG00000160013	PTGIR	prostaglandin I2 receptor	-1.7457	0.0000
63121	ENSG00000251886	RNU6-120P	RNA, U6 small nuclear 120, pseudogene	-1.7438	0.0000
63120	ENSG00000244527		ribosomal protein L21 (RPL21) pseudogene	-1.7438	0.0000
63119	ENSG00000282860		novel transcript	-1.7437	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...