Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773725

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773725


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M352Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000244025 KRTAP19-3 keratin associated protein 19-3 2.5850 0.0000
2 ENSG00000255565 novel transcript 2.5850 0.0000
3 ENSG00000255380 novel pseudogene containing a Zinc finger, C2H2 type domain 2.3219 0.0003
4 ENSG00000134545 KLRC1 killer cell lectin like receptor C1 2.0000 0.0024
5 ENSG00000206923 RNU6-432P RNA, U6 small nuclear 432, pseudogene 2.0000 0.0024
6 ENSG00000224104 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2) pseudogene 2.0000 0.0024
7 ENSG00000226625 RBM17P1 RNA binding motif protein 17 pseudogene 1 2.0000 0.0000
8 ENSG00000226640 novel transcript 2.0000 0.0024
9 ENSG00000227016 LINC02796 long intergenic non-protein coding RNA 2796 2.0000 0.0024
10 ENSG00000241648 CADM2-AS2 CADM2 antisense RNA 2 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000270372 novel transcript -1.7464 0.0031
63127 ENSG00000263107 solute carrier family 47, member 1 (SLC47A1) pseudogene -1.7463 0.0000
63126 ENSG00000151834 GABRA2 gamma-aminobutyric acid type A receptor subunit alpha2 -1.7462 0.0000
63125 ENSG00000279160 TEC -1.7461 0.0000
63124 ENSG00000213626 LBH LBH regulator of WNT signaling pathway -1.7458 0.0000
63123 ENSG00000100226 GTPBP1 GTP binding protein 1 -1.7457 0.0000
63122 ENSG00000160013 PTGIR prostaglandin I2 receptor -1.7457 0.0000
63121 ENSG00000251886 RNU6-120P RNA, U6 small nuclear 120, pseudogene -1.7438 0.0000
63120 ENSG00000244527 ribosomal protein L21 (RPL21) pseudogene -1.7438 0.0000
63119 ENSG00000282860 novel transcript -1.7437 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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