Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773725
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773725
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M352
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000244025
KRTAP19-3
keratin associated protein 19-3
2.5850
0.0000
2
ENSG00000255565
novel transcript
2.5850
0.0000
3
ENSG00000255380
novel pseudogene containing a Zinc finger, C2H2 type domain
2.3219
0.0003
4
ENSG00000134545
KLRC1
killer cell lectin like receptor C1
2.0000
0.0024
5
ENSG00000206923
RNU6-432P
RNA, U6 small nuclear 432, pseudogene
2.0000
0.0024
6
ENSG00000224104
SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2) pseudogene
2.0000
0.0024
7
ENSG00000226625
RBM17P1
RNA binding motif protein 17 pseudogene 1
2.0000
0.0000
8
ENSG00000226640
novel transcript
2.0000
0.0024
9
ENSG00000227016
LINC02796
long intergenic non-protein coding RNA 2796
2.0000
0.0024
10
ENSG00000241648
CADM2-AS2
CADM2 antisense RNA 2
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000270372
novel transcript
-1.7464
0.0031
63127
ENSG00000263107
solute carrier family 47, member 1 (SLC47A1) pseudogene
-1.7463
0.0000
63126
ENSG00000151834
GABRA2
gamma-aminobutyric acid type A receptor subunit alpha2
-1.7462
0.0000
63125
ENSG00000279160
TEC
-1.7461
0.0000
63124
ENSG00000213626
LBH
LBH regulator of WNT signaling pathway
-1.7458
0.0000
63123
ENSG00000100226
GTPBP1
GTP binding protein 1
-1.7457
0.0000
63122
ENSG00000160013
PTGIR
prostaglandin I2 receptor
-1.7457
0.0000
63121
ENSG00000251886
RNU6-120P
RNA, U6 small nuclear 120, pseudogene
-1.7438
0.0000
63120
ENSG00000244527
ribosomal protein L21 (RPL21) pseudogene
-1.7438
0.0000
63119
ENSG00000282860
novel transcript
-1.7437
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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