SHOGoiN Cell Methylome: GSM2773725

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773725


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M352Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000244025 KRTAP19-3 keratin associated protein 19-3 2.5850 0.0000
2 ENSG00000255565 novel transcript 2.5850 0.0000
3 ENSG00000255380 novel pseudogene containing a Zinc finger, C2H2 type domain 2.3219 0.0003
4 ENSG00000134545 KLRC1 killer cell lectin like receptor C1 2.0000 0.0024
5 ENSG00000206923 RNU6-432P RNA, U6 small nuclear 432, pseudogene 2.0000 0.0024
6 ENSG00000224104 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2) pseudogene 2.0000 0.0024
7 ENSG00000226625 RBM17P1 RNA binding motif protein 17 pseudogene 1 2.0000 0.0000
8 ENSG00000226640 novel transcript 2.0000 0.0024
9 ENSG00000227016 novel transcript 2.0000 0.0024
10 ENSG00000241648 CADM2-AS2 CADM2 antisense RNA 2 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000130054 FAM155B family with sequence similarity 155 member B -1.7959 0.0000
63340 ENSG00000165379 LRFN5 leucine rich repeat and fibronectin type III domain containing 5 -1.7957 0.0000
63339 ENSG00000276118 transmembrane protein 128 (TMEM128) pseudogene -1.7955 0.0116
63338 ENSG00000249955 novel transcript -1.7955 0.0004
63337 ENSG00000005022 SLC25A5 solute carrier family 25 member 5 -1.7954 0.0000
63336 ENSG00000159110 IFNAR2 interferon alpha and beta receptor subunit 2 -1.7954 0.0000
63335 ENSG00000233875 novel transcript -1.7952 0.0000
63334 ENSG00000135925 WNT10A Wnt family member 10A -1.7944 0.0000
63333 ENSG00000133858 ZFC3H1 zinc finger C3H1-type containing -1.7939 0.0000
63332 ENSG00000251284 speckle-type POZ protein-like (SPOPL) pseudogene -1.7938 0.0760

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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