Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773726

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773726


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M353Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206732 RNU6-936P RNA, U6 small nuclear 936, pseudogene 2.0000 0.0026
2 ENSG00000227418 PCGEM1 PCGEM1 prostate-specific transcript 2.0000 0.0026
3 ENSG00000236047 RPL13AP12 ribosomal protein L13a pseudogene 12 2.0000 0.0026
4 ENSG00000239001 RNU6-420P RNA, U6 small nuclear 420, pseudogene 2.0000 0.0026
5 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 1.9308 0.0000
6 ENSG00000230198 RPL37P4 ribosomal protein L37 pseudogene 4 1.8617 0.0000
7 ENSG00000175749 EIF3KP1 eukaryotic translation initiation factor 3 subunit K pseudogene 1 1.5850 0.0191
8 ENSG00000201311 Y RNA 1.5850 0.0191
9 ENSG00000212952 novel pseudogene 1.5850 0.0191
10 ENSG00000219867 ras homologue gene family pseudogene 1.5850 0.0191

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000173276 ZBTB21 zinc finger and BTB domain containing 21 -1.8328 0.0000
63127 ENSG00000231809 NANOGP9 Nanog homeobox pseudogene 9 -1.8326 0.0001
63126 ENSG00000168792 ABHD15 abhydrolase domain containing 15 -1.8323 0.0000
63125 ENSG00000106780 MEGF9 multiple EGF like domains 9 -1.8320 0.0000
63124 ENSG00000013293 SLC7A14 solute carrier family 7 member 14 -1.8315 0.0000
63123 ENSG00000253591 KCNIP1-AS1 KCNIP1 antisense RNA 1 -1.8314 0.0000
63122 ENSG00000265962 GACAT2 gastric cancer associated transcript 2 -1.8309 0.0000
63121 ENSG00000255527 tripartite motif-containing 43 (TRIM43) pseudogene -1.8308 0.0000
63120 ENSG00000266673 ribonuclease P/MRP 40kDa subunit (RPP40) pseudogene -1.8307 0.0001
63119 ENSG00000228241 MOB1AP1 MOB kinase activator 1A pseudogene 1 -1.8306 0.5104

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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