Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773726
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773726
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M353
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000206732
RNU6-936P
RNA, U6 small nuclear 936, pseudogene
2.0000
0.0026
2
ENSG00000227418
PCGEM1
PCGEM1 prostate-specific transcript
2.0000
0.0026
3
ENSG00000236047
RPL13AP12
ribosomal protein L13a pseudogene 12
2.0000
0.0026
4
ENSG00000239001
RNU6-420P
RNA, U6 small nuclear 420, pseudogene
2.0000
0.0026
5
ENSG00000271934
OR2AS2P
olfactory receptor family 2 subfamily AS member 2 pseudogene
1.9308
0.0000
6
ENSG00000230198
RPL37P4
ribosomal protein L37 pseudogene 4
1.8617
0.0000
7
ENSG00000175749
EIF3KP1
eukaryotic translation initiation factor 3 subunit K pseudogene 1
1.5850
0.0191
8
ENSG00000201311
Y RNA
1.5850
0.0191
9
ENSG00000212952
novel pseudogene
1.5850
0.0191
10
ENSG00000219867
ras homologue gene family pseudogene
1.5850
0.0191
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000173276
ZBTB21
zinc finger and BTB domain containing 21
-1.8328
0.0000
63127
ENSG00000231809
NANOGP9
Nanog homeobox pseudogene 9
-1.8326
0.0001
63126
ENSG00000168792
ABHD15
abhydrolase domain containing 15
-1.8323
0.0000
63125
ENSG00000106780
MEGF9
multiple EGF like domains 9
-1.8320
0.0000
63124
ENSG00000013293
SLC7A14
solute carrier family 7 member 14
-1.8315
0.0000
63123
ENSG00000253591
KCNIP1-AS1
KCNIP1 antisense RNA 1
-1.8314
0.0000
63122
ENSG00000265962
GACAT2
gastric cancer associated transcript 2
-1.8309
0.0000
63121
ENSG00000255527
tripartite motif-containing 43 (TRIM43) pseudogene
-1.8308
0.0000
63120
ENSG00000266673
ribonuclease P/MRP 40kDa subunit (RPP40) pseudogene
-1.8307
0.0001
63119
ENSG00000228241
MOB1AP1
MOB kinase activator 1A pseudogene 1
-1.8306
0.5104
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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