Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773726

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773726 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M353	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000206732	RNU6-936P	RNA, U6 small nuclear 936, pseudogene	2.0000	0.0026
2	ENSG00000227418	PCGEM1	PCGEM1 prostate-specific transcript	2.0000	0.0026
3	ENSG00000236047	RPL13AP12	ribosomal protein L13a pseudogene 12	2.0000	0.0026
4	ENSG00000239001	RNU6-420P	RNA, U6 small nuclear 420, pseudogene	2.0000	0.0026
5	ENSG00000271934	OR2AS2P	olfactory receptor family 2 subfamily AS member 2 pseudogene	1.9308	0.0000
6	ENSG00000230198	RPL37P4	ribosomal protein L37 pseudogene 4	1.8617	0.0000
7	ENSG00000175749	EIF3KP1	eukaryotic translation initiation factor 3 subunit K pseudogene 1	1.5850	0.0191
8	ENSG00000201311		Y RNA	1.5850	0.0191
9	ENSG00000212952		novel pseudogene	1.5850	0.0191
10	ENSG00000219867		ras homologue gene family pseudogene	1.5850	0.0191

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000173276	ZBTB21	zinc finger and BTB domain containing 21	-1.8328	0.0000
63127	ENSG00000231809	NANOGP9	Nanog homeobox pseudogene 9	-1.8326	0.0001
63126	ENSG00000168792	ABHD15	abhydrolase domain containing 15	-1.8323	0.0000
63125	ENSG00000106780	MEGF9	multiple EGF like domains 9	-1.8320	0.0000
63124	ENSG00000013293	SLC7A14	solute carrier family 7 member 14	-1.8315	0.0000
63123	ENSG00000253591	KCNIP1-AS1	KCNIP1 antisense RNA 1	-1.8314	0.0000
63122	ENSG00000265962	GACAT2	gastric cancer associated transcript 2	-1.8309	0.0000
63121	ENSG00000255527		tripartite motif-containing 43 (TRIM43) pseudogene	-1.8308	0.0000
63120	ENSG00000266673		ribonuclease P/MRP 40kDa subunit (RPP40) pseudogene	-1.8307	0.0001
63119	ENSG00000228241	MOB1AP1	MOB kinase activator 1A pseudogene 1	-1.8306	0.5104

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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