SHOGoiN Cell Methylome: GSM2773726
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773726 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M353 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000206732 | RNU6-936P | RNA, U6 small nuclear 936, pseudogene | 2.0000 | 0.0026 |
| 2 | ENSG00000227418 | PCGEM1 | PCGEM1 prostate-specific transcript | 2.0000 | 0.0026 |
| 3 | ENSG00000236047 | ribosomal protein L13a (RPL13A) pseudogene | 2.0000 | 0.0026 | |
| 4 | ENSG00000239001 | RNU6-420P | RNA, U6 small nuclear 420, pseudogene | 2.0000 | 0.0026 |
| 5 | ENSG00000271934 | OR2AS2P | olfactory receptor family 2 subfamily AS member 2 pseudogene | 1.9308 | 0.0000 |
| 6 | ENSG00000230198 | RPL37P4 | ribosomal protein L37 pseudogene 4 | 1.8617 | 0.0000 |
| 7 | ENSG00000175749 | EIF3KP1 | eukaryotic translation initiation factor 3 subunit K pseudogene 1 | 1.5850 | 0.0191 |
| 8 | ENSG00000201311 | NA | 1.5850 | 0.0191 | |
| 9 | ENSG00000212952 | novel pseudogene | 1.5850 | 0.0191 | |
| 10 | ENSG00000219867 | ras homologue gene family pseudogene | 1.5850 | 0.0191 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000270076 | novel transcript | -1.8901 | 0.0000 | |
| 63340 | ENSG00000149948 | HMGA2 | high mobility group AT-hook 2 | -1.8900 | 0.0000 |
| 63339 | ENSG00000253884 | chromosome 9 open reading frame 122 (C9orf122) pseudogene | -1.8897 | 0.0000 | |
| 63338 | ENSG00000197706 | OR6C74 | olfactory receptor family 6 subfamily C member 74 | -1.8888 | 0.0154 |
| 63337 | ENSG00000164611 | PTTG1 | PTTG1 regulator of sister chromatid separation, securin | -1.8886 | 0.0000 |
| 63336 | ENSG00000204599 | TRIM39 | tripartite motif containing 39 | -1.8885 | 0.0000 |
| 63335 | ENSG00000283710 | MIR1204 | microRNA 1204 | -1.8881 | 0.0000 |
| 63334 | ENSG00000267634 | RPL7L1P5 | ribosomal protein L7 like 1 pseudogene 5 | -1.8880 | 0.0000 |
| 63333 | ENSG00000154736 | ADAMTS5 | ADAM metallopeptidase with thrombospondin type 1 motif 5 | -1.8871 | 0.0000 |
| 63332 | ENSG00000169330 | MINAR1 | membrane integral NOTCH2 associated receptor 1 | -1.8870 | 0.0000 |
