SHOGoiN Cell Methylome: GSM2773726

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773726


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M353Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206732 RNU6-936P RNA, U6 small nuclear 936, pseudogene 2.0000 0.0026
2 ENSG00000227418 PCGEM1 PCGEM1 prostate-specific transcript 2.0000 0.0026
3 ENSG00000236047 ribosomal protein L13a (RPL13A) pseudogene 2.0000 0.0026
4 ENSG00000239001 RNU6-420P RNA, U6 small nuclear 420, pseudogene 2.0000 0.0026
5 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 1.9308 0.0000
6 ENSG00000230198 RPL37P4 ribosomal protein L37 pseudogene 4 1.8617 0.0000
7 ENSG00000175749 EIF3KP1 eukaryotic translation initiation factor 3 subunit K pseudogene 1 1.5850 0.0191
8 ENSG00000201311 NA 1.5850 0.0191
9 ENSG00000212952 novel pseudogene 1.5850 0.0191
10 ENSG00000219867 ras homologue gene family pseudogene 1.5850 0.0191

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000270076 novel transcript -1.8901 0.0000
63340 ENSG00000149948 HMGA2 high mobility group AT-hook 2 -1.8900 0.0000
63339 ENSG00000253884 chromosome 9 open reading frame 122 (C9orf122) pseudogene -1.8897 0.0000
63338 ENSG00000197706 OR6C74 olfactory receptor family 6 subfamily C member 74 -1.8888 0.0154
63337 ENSG00000164611 PTTG1 PTTG1 regulator of sister chromatid separation, securin -1.8886 0.0000
63336 ENSG00000204599 TRIM39 tripartite motif containing 39 -1.8885 0.0000
63335 ENSG00000283710 MIR1204 microRNA 1204 -1.8881 0.0000
63334 ENSG00000267634 RPL7L1P5 ribosomal protein L7 like 1 pseudogene 5 -1.8880 0.0000
63333 ENSG00000154736 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 -1.8871 0.0000
63332 ENSG00000169330 MINAR1 membrane integral NOTCH2 associated receptor 1 -1.8870 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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