SHOGoiN Cell Methylome: GSM2773727

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773727


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M354Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213542 ribosomal protein L7a (RPL7A) pseudogene 2.8074 0.0000
2 ENSG00000120235 IFNA6 interferon alpha 6 2.5850 0.0000
3 ENSG00000233464 NANOGP11 Nanog homeobox pseudogene 11 2.5850 0.0000
4 ENSG00000280336 novel transcript 2.5850 0.0000
5 ENSG00000256450 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2) pseudogene 2.5537 0.0000
6 ENSG00000255039 LINC02553 long intergenic non-protein coding RNA 2553 2.5382 0.0000
7 ENSG00000276672 novel transcript, sense intronic to RFC3 2.4466 0.0000
8 ENSG00000232647 POLR3KP1 RNA polymerase III subunit K pseudogene 1 2.3873 0.0000
9 ENSG00000181214 OR8G2P olfactory receptor family 8 subfamily G member 2 pseudogene 2.3219 0.0003
10 ENSG00000234520 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000260367 novel transcript, antisense to SPNS1 -2.0407 0.0000
63340 ENSG00000231171 LINC01098 long intergenic non-protein coding RNA 1098 -2.0402 0.0002
63339 ENSG00000199866 NA -2.0398 0.0000
63338 ENSG00000188883 KLRG2 killer cell lectin like receptor G2 -2.0386 0.0000
63337 ENSG00000228016 RAPGEF4-AS1 RAPGEF4 antisense RNA 1 -2.0386 0.0000
63336 ENSG00000224783 MIPEPP2 mitochondrial intermediate peptidase pseudogene 2 -2.0381 0.1635
63335 ENSG00000226479 TMEM185B transmembrane protein 185B -2.0367 0.0000
63334 ENSG00000225110 PNMA6F PNMA family member 6F -2.0361 0.0000
63333 ENSG00000136379 ABHD17C abhydrolase domain containing 17C -2.0357 0.0000
63332 ENSG00000268120 novel transcript -2.0357 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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