Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773727

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773727


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M354Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213542 ribosomal protein L7a (RPL7A) pseudogene 2.8074 0.0000
2 ENSG00000120235 IFNA6 interferon alpha 6 2.5850 0.0000
3 ENSG00000233464 NANOGP11 Nanog homeobox pseudogene 11 2.5850 0.0000
4 ENSG00000280336 novel transcript 2.5850 0.0000
5 ENSG00000256450 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2) pseudogene 2.5537 0.0000
6 ENSG00000255039 LINC02553 long intergenic non-protein coding RNA 2553 2.5382 0.0000
7 ENSG00000276672 novel transcript, sense intronic to RFC3 2.4466 0.0000
8 ENSG00000232647 POLR3KP1 RNA polymerase III subunit K pseudogene 1 2.3873 0.0000
9 ENSG00000181214 OR8G2P olfactory receptor family 8 subfamily G member 2 pseudogene 2.3219 0.0003
10 ENSG00000234520 heart tissue-associated transcript 17 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000168122 ZNF355P zinc finger protein 355, pseudogene -2.0000 1.0000
63127 ENSG00000166013 TRIM53BP tripartite motif containing 53B, pseudogene -2.0000 1.0000
63126 ENSG00000139155 SLCO1C1 solute carrier organic anion transporter family member 1C1 -2.0000 1.0000
63125 ENSG00000175348 TMEM9B TMEM9 domain family member B -1.9996 0.0000
63123 ENSG00000231645 KRT17P6 keratin 17 pseudogene 6 -1.9994 0.0000
63122 ENSG00000169885 CALML6 calmodulin like 6 -1.9994 0.0000
63121 ENSG00000246790 novel transcript, antisense to SORL1 -1.9991 0.0000
63120 ENSG00000132671 SSTR4 somatostatin receptor 4 -1.9987 0.0000
63119 ENSG00000101193 GID8 GID complex subunit 8 homolog -1.9985 0.0000
10 ENSG00000234520 heart tissue-associated transcript 17 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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