Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773728

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773728


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M355Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263938 novel transcript, sense intronic to PPM1E 3.3219 0.0000
2 ENSG00000237790 LINC01318 long intergenic non-protein coding RNA 1318 3.1699 0.0000
3 ENSG00000199459 Y RNA 2.8074 0.0000
4 ENSG00000199378 Y RNA 2.5850 0.0001
5 ENSG00000263872 MIR4528 microRNA 4528 2.5850 0.0000
6 ENSG00000177888 ZBTB41 zinc finger and BTB domain containing 41 2.3219 0.0004
7 ENSG00000202430 RNA5SP88 RNA, 5S ribosomal pseudogene 88 2.3219 0.0000
8 ENSG00000211802 TRAV22 T cell receptor alpha variable 22 2.3219 0.0004
9 ENSG00000211812 TRAV26-2 T cell receptor alpha variable 26-2 2.3219 0.0004
10 ENSG00000212612 RNU6-1239P RNA, U6 small nuclear 1239, pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000256463 SALL3 spalt like transcription factor 3 -2.0009 0.0000
63127 ENSG00000186432 KPNA4 karyopherin subunit alpha 4 -2.0008 0.0000
63126 ENSG00000095739 BAMBI BMP and activin membrane bound inhibitor -2.0006 0.0000
63125 ENSG00000284209 cyclin Y (CCNY) pseudogene -2.0000 1.0000
63124 ENSG00000280279 LINC02887 long intergenic non-protein coding RNA 2887 -2.0000 1.0000
63123 ENSG00000277858 H2AB2 H2A.B variant histone 2 -2.0000 1.0000
63122 ENSG00000274987 novel transcript, antisense to KRAS -2.0000 1.0000
63120 ENSG00000273942 NA -2.0000 1.0000
63119 ENSG00000273882 MIR8066 microRNA 8066 -2.0000 1.0000
10 ENSG00000212612 RNU6-1239P RNA, U6 small nuclear 1239, pseudogene 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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