SHOGoiN Cell Methylome: GSM2773728

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773728


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M355Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263938 novel transcript, sense intronic to PPM1E 3.3219 0.0000
2 ENSG00000237790 LINC01318 long intergenic non-protein coding RNA 1318 3.1699 0.0000
3 ENSG00000199459 NA 2.8074 0.0000
4 ENSG00000199378 NA 2.5850 0.0001
5 ENSG00000263872 MIR4528 microRNA 4528 2.5850 0.0000
6 ENSG00000177888 ZBTB41 zinc finger and BTB domain containing 41 2.3219 0.0004
7 ENSG00000202430 RNA5SP88 RNA, 5S ribosomal pseudogene 88 2.3219 0.0000
8 ENSG00000211802 TRAV22 T cell receptor alpha variable 22 2.3219 0.0004
9 ENSG00000211812 TRAV26-2 T cell receptor alpha variable 26-2 2.3219 0.0004
10 ENSG00000212612 RNU6-1239P RNA, U6 small nuclear 1239, pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000123095 BHLHE41 basic helix-loop-helix family member e41 -2.0710 0.0000
63340 ENSG00000249803 novel transcript -2.0703 0.0000
63339 ENSG00000080709 KCNN2 potassium calcium-activated channel subfamily N member 2 -2.0696 0.0000
63338 ENSG00000259462 CPEB1-AS1 CPEB1 antisense RNA 1 -2.0694 0.0000
63337 ENSG00000256513 novel transcript -2.0687 0.0000
63336 ENSG00000070087 PFN2 profilin 2 -2.0686 0.0000
63335 ENSG00000246695 RASSF8-AS1 RASSF8 antisense RNA 1 -2.0683 0.0000
63334 ENSG00000272008 novel transcript, antisense to ZNF292 -2.0679 0.0000
63333 ENSG00000023909 GCLM glutamate-cysteine ligase modifier subunit -2.0676 0.0000
63332 ENSG00000199047 MIR378A microRNA 378a -2.0673 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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