Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773729

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773729


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M356Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273369 novel transcript, antisense to GUF1 2.5850 0.0000
2 ENSG00000256243 RPL7AP3 ribosomal protein L7a pseudogene 3 2.0850 0.0000
3 ENSG00000204814 novel transcript 2.0000 0.0027
4 ENSG00000231454 novel pseudogene 2.0000 0.0027
5 ENSG00000232576 ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene 2.0000 0.0027
6 ENSG00000236929 RPL35AP37 ribosomal protein L35a pseudogene 37 2.0000 0.0000
7 ENSG00000237388 OR4A47 olfactory receptor family 4 subfamily A member 47 2.0000 0.0027
8 ENSG00000250390 novel transcript 2.0000 0.0027
9 ENSG00000255215 OR4R1P olfactory receptor family 4 subfamily R member 1 pseudogene 2.0000 0.0027
10 ENSG00000256892 MTRNR2L7 MT-RNR2 like 7 2.0000 0.0027

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000270802 ribosomal protein L21 (RPL21) pseudogene -1.6985 0.0000
63127 ENSG00000252062 RNU6-469P RNA, U6 small nuclear 469, pseudogene -1.6984 0.2518
63126 ENSG00000226716 novel transcript -1.6982 0.0259
63125 ENSG00000254668 zinc finger and BTB domain containing 5 (ZBTB5) pseudogene -1.6978 0.0006
63124 ENSG00000241472 PTPRG-AS1 PTPRG antisense RNA 1 -1.6977 0.0000
63123 ENSG00000107338 SHB SH2 domain containing adaptor protein B -1.6977 0.0000
63122 ENSG00000101213 PTK6 protein tyrosine kinase 6 -1.6975 0.0000
63121 ENSG00000090376 IRAK3 interleukin 1 receptor associated kinase 3 -1.6974 0.0000
63120 ENSG00000283692 novel transcript -1.6973 0.0000
63119 ENSG00000176160 HSF5 heat shock transcription factor 5 -1.6969 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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