SHOGoiN Cell Methylome: GSM2773729

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773729


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M356Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273369 novel transcript, antisense to GUF1 2.5850 0.0000
2 ENSG00000256243 RPL7AP3 ribosomal protein L7a pseudogene 3 2.0850 0.0000
3 ENSG00000204814 novel transcript 2.0000 0.0027
4 ENSG00000231454 novel pseudogene 2.0000 0.0027
5 ENSG00000232576 ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene 2.0000 0.0027
6 ENSG00000236929 ribosomal protein L35a (RPL35A) pseudogene 2.0000 0.0000
7 ENSG00000237388 OR4A47 olfactory receptor family 4 subfamily A member 47 2.0000 0.0027
8 ENSG00000250390 novel transcript 2.0000 0.0027
9 ENSG00000255215 OR4R1P olfactory receptor family 4 subfamily R member 1 pseudogene 2.0000 0.0027
10 ENSG00000256892 MTRNR2L7 MT-RNR2 like 7 2.0000 0.0027

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000100987 VSX1 visual system homeobox 1 -1.7637 0.0000
63340 ENSG00000236957 pseudogene similar to part of a immunoglobulin receptor-like protein -1.7633 0.0000
63339 ENSG00000128710 HOXD10 homeobox D10 -1.7633 0.0000
63338 ENSG00000231527 FAM27C family with sequence similarity 27 member C -1.7628 0.0111
63337 ENSG00000050628 PTGER3 prostaglandin E receptor 3 -1.7624 0.0000
63336 ENSG00000214826 DDX12P DEAD/H-box helicase 12, pseudogene -1.7624 0.0000
63335 ENSG00000283239 novel transcript -1.7623 0.0000
63334 ENSG00000234961 novel transcript -1.7620 0.0000
63333 ENSG00000164488 DACT2 dishevelled binding antagonist of beta catenin 2 -1.7615 0.0000
63332 ENSG00000227051 C14orf132 chromosome 14 open reading frame 132 -1.7609 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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