Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773729

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773729 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M356	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000273369		novel transcript, antisense to GUF1	2.5850	0.0000
2	ENSG00000256243	RPL7AP3	ribosomal protein L7a pseudogene 3	2.0850	0.0000
3	ENSG00000204814		novel transcript	2.0000	0.0027
4	ENSG00000231454		novel pseudogene	2.0000	0.0027
5	ENSG00000232576		ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene	2.0000	0.0027
6	ENSG00000236929	RPL35AP37	ribosomal protein L35a pseudogene 37	2.0000	0.0000
7	ENSG00000237388	OR4A47	olfactory receptor family 4 subfamily A member 47	2.0000	0.0027
8	ENSG00000250390		novel transcript	2.0000	0.0027
9	ENSG00000255215	OR4R1P	olfactory receptor family 4 subfamily R member 1 pseudogene	2.0000	0.0027
10	ENSG00000256892	MTRNR2L7	MT-RNR2 like 7	2.0000	0.0027

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000270802		ribosomal protein L21 (RPL21) pseudogene	-1.6985	0.0000
63127	ENSG00000252062	RNU6-469P	RNA, U6 small nuclear 469, pseudogene	-1.6984	0.2518
63126	ENSG00000226716		novel transcript	-1.6982	0.0259
63125	ENSG00000254668		zinc finger and BTB domain containing 5 (ZBTB5) pseudogene	-1.6978	0.0006
63124	ENSG00000241472	PTPRG-AS1	PTPRG antisense RNA 1	-1.6977	0.0000
63123	ENSG00000107338	SHB	SH2 domain containing adaptor protein B	-1.6977	0.0000
63122	ENSG00000101213	PTK6	protein tyrosine kinase 6	-1.6975	0.0000
63121	ENSG00000090376	IRAK3	interleukin 1 receptor associated kinase 3	-1.6974	0.0000
63120	ENSG00000283692		novel transcript	-1.6973	0.0000
63119	ENSG00000176160	HSF5	heat shock transcription factor 5	-1.6969	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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