Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773729
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773729
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M356
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000273369
novel transcript, antisense to GUF1
2.5850
0.0000
2
ENSG00000256243
RPL7AP3
ribosomal protein L7a pseudogene 3
2.0850
0.0000
3
ENSG00000204814
novel transcript
2.0000
0.0027
4
ENSG00000231454
novel pseudogene
2.0000
0.0027
5
ENSG00000232576
ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene
2.0000
0.0027
6
ENSG00000236929
RPL35AP37
ribosomal protein L35a pseudogene 37
2.0000
0.0000
7
ENSG00000237388
OR4A47
olfactory receptor family 4 subfamily A member 47
2.0000
0.0027
8
ENSG00000250390
novel transcript
2.0000
0.0027
9
ENSG00000255215
OR4R1P
olfactory receptor family 4 subfamily R member 1 pseudogene
2.0000
0.0027
10
ENSG00000256892
MTRNR2L7
MT-RNR2 like 7
2.0000
0.0027
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000270802
ribosomal protein L21 (RPL21) pseudogene
-1.6985
0.0000
63127
ENSG00000252062
RNU6-469P
RNA, U6 small nuclear 469, pseudogene
-1.6984
0.2518
63126
ENSG00000226716
novel transcript
-1.6982
0.0259
63125
ENSG00000254668
zinc finger and BTB domain containing 5 (ZBTB5) pseudogene
-1.6978
0.0006
63124
ENSG00000241472
PTPRG-AS1
PTPRG antisense RNA 1
-1.6977
0.0000
63123
ENSG00000107338
SHB
SH2 domain containing adaptor protein B
-1.6977
0.0000
63122
ENSG00000101213
PTK6
protein tyrosine kinase 6
-1.6975
0.0000
63121
ENSG00000090376
IRAK3
interleukin 1 receptor associated kinase 3
-1.6974
0.0000
63120
ENSG00000283692
novel transcript
-1.6973
0.0000
63119
ENSG00000176160
HSF5
heat shock transcription factor 5
-1.6969
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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