SHOGoiN Cell Methylome: GSM2773729
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773729 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M356 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000273369 | novel transcript, antisense to GUF1 | 2.5850 | 0.0000 | |
| 2 | ENSG00000256243 | RPL7AP3 | ribosomal protein L7a pseudogene 3 | 2.0850 | 0.0000 |
| 3 | ENSG00000204814 | novel transcript | 2.0000 | 0.0027 | |
| 4 | ENSG00000231454 | novel pseudogene | 2.0000 | 0.0027 | |
| 5 | ENSG00000232576 | ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene | 2.0000 | 0.0027 | |
| 6 | ENSG00000236929 | ribosomal protein L35a (RPL35A) pseudogene | 2.0000 | 0.0000 | |
| 7 | ENSG00000237388 | OR4A47 | olfactory receptor family 4 subfamily A member 47 | 2.0000 | 0.0027 |
| 8 | ENSG00000250390 | novel transcript | 2.0000 | 0.0027 | |
| 9 | ENSG00000255215 | OR4R1P | olfactory receptor family 4 subfamily R member 1 pseudogene | 2.0000 | 0.0027 |
| 10 | ENSG00000256892 | MTRNR2L7 | MT-RNR2 like 7 | 2.0000 | 0.0027 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000100987 | VSX1 | visual system homeobox 1 | -1.7637 | 0.0000 |
| 63340 | ENSG00000236957 | pseudogene similar to part of a immunoglobulin receptor-like protein | -1.7633 | 0.0000 | |
| 63339 | ENSG00000128710 | HOXD10 | homeobox D10 | -1.7633 | 0.0000 |
| 63338 | ENSG00000231527 | FAM27C | family with sequence similarity 27 member C | -1.7628 | 0.0111 |
| 63337 | ENSG00000050628 | PTGER3 | prostaglandin E receptor 3 | -1.7624 | 0.0000 |
| 63336 | ENSG00000214826 | DDX12P | DEAD/H-box helicase 12, pseudogene | -1.7624 | 0.0000 |
| 63335 | ENSG00000283239 | novel transcript | -1.7623 | 0.0000 | |
| 63334 | ENSG00000234961 | novel transcript | -1.7620 | 0.0000 | |
| 63333 | ENSG00000164488 | DACT2 | dishevelled binding antagonist of beta catenin 2 | -1.7615 | 0.0000 |
| 63332 | ENSG00000227051 | C14orf132 | chromosome 14 open reading frame 132 | -1.7609 | 0.0000 |
