SHOGoiN Cell Methylome: GSM2773730

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773730


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M357Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227979 cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene 2.3219 0.0008
2 ENSG00000137080 IFNA21 interferon alpha 21 2.0000 0.0046
3 ENSG00000207750 MIR553 microRNA 553 2.0000 0.0000
4 ENSG00000224000 novel transcript 2.0000 0.0046
5 ENSG00000225222 CHCHD4P5 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 5 2.0000 0.0000
6 ENSG00000236946 HNRNPA1P70 heterogeneous nuclear ribonucleoprotein A1 pseudogene 70 2.0000 0.0000
7 ENSG00000248877 PGBD4P4 piggyBac transposable element derived 4 pseudogene 4 2.0000 0.0046
8 ENSG00000252179 RNA5SP255 RNA, 5S ribosomal pseudogene 255 2.0000 0.0000
9 ENSG00000257781 novel transcript 2.0000 0.0046
10 ENSG00000257893 LINC02404 long intergenic non-protein coding RNA 2404 2.0000 0.0046

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000272157 novel transcript, antisense to NEFL -1.5920 0.0000
63340 ENSG00000179935 LINC00652 long intergenic non-protein coding RNA 652 -1.5919 0.0000
63339 ENSG00000251253 MTHFD2P4 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 4 -1.5912 0.0153
63338 ENSG00000135722 FBXL8 F-box and leucine rich repeat protein 8 -1.5908 0.0000
63337 ENSG00000200495 RNU6-1205P RNA, U6 small nuclear 1205, pseudogene -1.5907 0.0000
63336 ENSG00000228485 GRK5-IT1 GRK5 intronic transcript 1 -1.5906 0.0000
63335 ENSG00000113083 LOX lysyl oxidase -1.5905 0.0000
63334 ENSG00000202537 NA -1.5897 0.0000
63333 ENSG00000153162 BMP6 bone morphogenetic protein 6 -1.5895 0.0000
63332 ENSG00000237783 ribosomal protein S2 (RPS2) pseudogene -1.5887 0.0067

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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