Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773730

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773730


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M357Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227979 cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene 2.3219 0.0008
2 ENSG00000137080 IFNA21 interferon alpha 21 2.0000 0.0046
3 ENSG00000207750 MIR553 microRNA 553 2.0000 0.0000
4 ENSG00000224000 novel transcript 2.0000 0.0046
5 ENSG00000225222 CHCHD4P5 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 5 2.0000 0.0000
6 ENSG00000236946 HNRNPA1P70 heterogeneous nuclear ribonucleoprotein A1 pseudogene 70 2.0000 0.0000
7 ENSG00000248877 PGBD4P4 piggyBac transposable element derived 4 pseudogene 4 2.0000 0.0046
8 ENSG00000252179 RNA5SP255 RNA, 5S ribosomal pseudogene 255 2.0000 0.0000
9 ENSG00000257781 novel transcript 2.0000 0.0046
10 ENSG00000257893 LINC02404 long intergenic non-protein coding RNA 2404 2.0000 0.0046

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234442 chromosome X open reading frame 49 (CXorf49) pseudogene -1.5692 0.0001
63127 ENSG00000215113 CXorf49B chromosome X open reading frame 49B -1.5692 0.0001
63126 ENSG00000200713 RNU6-682P RNA, U6 small nuclear 682, pseudogene -1.5689 0.0000
63125 ENSG00000233173 VN1R34P vomeronasal 1 receptor 34 pseudogene -1.5686 0.0000
63124 ENSG00000276210 LINC00226 long intergenic non-protein coding RNA 226 -1.5683 0.0000
63123 ENSG00000170345 FOS Fos proto-oncogene, AP-1 transcription factor subunit -1.5680 0.0000
63122 ENSG00000284200 MIR6847 microRNA 6847 -1.5676 0.0000
63121 ENSG00000265535 RN7SL475P RNA, 7SL, cytoplasmic 475, pseudogene -1.5669 0.0000
63120 ENSG00000175592 FOSL1 FOS like 1, AP-1 transcription factor subunit -1.5669 0.0000
63119 ENSG00000237819 CDK6-AS1 CDK6 antisense RNA 1 -1.5668 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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