SHOGoiN Cell Methylome: GSM2773731

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773731


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M358Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236191 RPS15AP25 ribosomal protein S15a pseudogene 25 2.3219 0.0005
2 ENSG00000239872 RPL35AP19 ribosomal protein L35a pseudogene 19 2.3219 0.0005
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1288 0.0000
4 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 2.0924 0.0000
5 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0074 0.0000
6 ENSG00000215089 KRT18P11 keratin 18 pseudogene 11 2.0000 0.0033
7 ENSG00000223177 RNA5SP39 RNA, 5S ribosomal pseudogene 39 2.0000 0.0033
8 ENSG00000226084 ribosomal protein L17 (RPL17) pseudogene 2.0000 0.0000
9 ENSG00000227616 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II (P4HA2) pseudogene 2.0000 0.0033
10 ENSG00000234903 pseudogene similar to part of a tripartite motif-containing family protein 2.0000 0.0033

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000222305 NA -2.1209 0.0000
63340 ENSG00000124587 PEX6 peroxisomal biogenesis factor 6 -2.1208 0.0000
63339 ENSG00000237669 HLA complex group 4 pseudogene 3 -2.1205 0.0000
63338 ENSG00000234224 TMEM229A transmembrane protein 229A -2.1204 0.0000
63337 ENSG00000204860 FAM201A family with sequence similarity 201 member A -2.1204 0.0000
63336 ENSG00000258731 novel transcript, antisense to DDHD1 -2.1199 0.0000
63335 ENSG00000103460 TOX3 TOX high mobility group box family member 3 -2.1195 0.0000
63334 ENSG00000181867 FTMT ferritin mitochondrial -2.1195 0.0000
63333 ENSG00000112299 VNN1 vanin 1 -2.1188 0.0163
63332 ENSG00000124134 KCNS1 potassium voltage-gated channel modifier subfamily S member 1 -2.1188 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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