Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773731

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773731


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M358Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236191 RPS15AP25 ribosomal protein S15a pseudogene 25 2.3219 0.0005
2 ENSG00000239872 RPL35AP19 ribosomal protein L35a pseudogene 19 2.3219 0.0005
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1288 0.0000
4 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 2.0924 0.0000
5 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0074 0.0000
6 ENSG00000215089 KRT18P11 keratin 18 pseudogene 11 2.0000 0.0033
7 ENSG00000223177 RNA5SP39 RNA, 5S ribosomal pseudogene 39 2.0000 0.0033
8 ENSG00000226084 ribosomal protein L17 (RPL17) pseudogene 2.0000 0.0000
9 ENSG00000227616 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II (P4HA2) pseudogene 2.0000 0.0033
10 ENSG00000234903 pseudogene similar to part of a tripartite motif-containing family protein 2.0000 0.0033

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000253614 novel transcript -2.0535 0.0000
63127 ENSG00000182634 OR10G7 olfactory receptor family 10 subfamily G member 7 -2.0532 0.0000
63126 ENSG00000121481 RNF2 ring finger protein 2 -2.0530 0.0000
63125 ENSG00000251453 HAUS1P1 HAUS augmin like complex subunit 1 pseudogene 1 -2.0526 0.0000
63123 ENSG00000207097 RNU6-614P RNA, U6 small nuclear 614, pseudogene -2.0524 0.0000
63122 ENSG00000255483 methyltransferase like 5 (METTL5) pseudogene -2.0522 0.0000
63121 ENSG00000138136 LBX1 ladybird homeobox 1 -2.0522 0.0000
63120 ENSG00000186312 CA5BP1 carbonic anhydrase 5B pseudogene 1 -2.0517 0.0000
63119 ENSG00000274507 novel transcript, antisense to PYGB -2.0512 0.0000
10 ENSG00000234903 pseudogene similar to part of a tripartite motif-containing family protein 2.0000 0.0033

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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