Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773732

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773732


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M359Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254437 cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene 2.8074 0.0000
2 ENSG00000223269 RN7SKP53 RN7SK pseudogene 53 2.5850 0.0000
3 ENSG00000236594 RPS27AP14 RPS27A pseudogene 14 2.5850 0.0000
4 ENSG00000255167 novel transcript 2.5850 0.0000
5 ENSG00000278857 IGKV1D-12 immunoglobulin kappa variable 1D-12 2.5850 0.0000
6 ENSG00000278980 novel transcript 2.5850 0.0000
7 ENSG00000110848 CD69 CD69 molecule 2.3219 0.0004
8 ENSG00000280279 LINC02887 long intergenic non-protein coding RNA 2887 2.3219 0.0004
9 ENSG00000238724 NA 2.1308 0.0000
10 ENSG00000187653 TMSB4XP8 TMSB4X pseudogene 8 2.0847 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000255622 PCDHB17P protocadherin beta 17 pseudogene -1.9879 0.0000
63127 ENSG00000264012 novel transcript, antisense to GATA6 -1.9868 0.0000
63126 ENSG00000269038 SF1-DT SF1 divergent transcript -1.9863 0.0000
63125 ENSG00000200492 Small nucleolar RNA U3 -1.9861 0.0001
63124 ENSG00000278966 TEC -1.9859 0.0000
63123 ENSG00000095203 EPB41L4B erythrocyte membrane protein band 4.1 like 4B -1.9851 0.0000
63122 ENSG00000165300 SLITRK5 SLIT and NTRK like family member 5 -1.9848 0.0000
63121 ENSG00000280273 novel transcript, antisense to MTMR9 -1.9847 0.0000
63120 ENSG00000166592 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator -1.9844 0.0000
63119 ENSG00000085491 SLC25A24 solute carrier family 25 member 24 -1.9842 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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