Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773733

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773733 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M360	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000250768	DPP3P1	DPP3 pseudogene 1	2.5850	0.0001
2	ENSG00000229907	DEFB108A	defensin beta 108A	2.3219	0.0000
3	ENSG00000250017		tigger transposable element derived 1 (TIGD1) pseudogene	2.3219	0.0006
4	ENSG00000249353	NPM1P27	nucleophosmin 1 pseudogene 27	2.2036	0.0000
5	ENSG00000276810		ribosomal protein L18a (RPL18A) pseudogene	2.1610	0.0000
6	ENSG00000259169	GNRHR2P1	GNRHR2 pseudogene 1	2.1507	0.0000
7	ENSG00000249921		guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (GNB2L1) pseudogene	2.0850	0.0000
8	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.0278	0.0000
9	ENSG00000198398	TMEM207	transmembrane protein 207	2.0000	0.0040
10	ENSG00000200355		Small nucleolar RNA SNORA72	2.0000	0.0040

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000236994	YBX1P9	Y-box binding protein 1 pseudogene 9	-1.9764	0.0000
63127	ENSG00000163516	ANKZF1	ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1	-1.9764	0.0000
63126	ENSG00000239112	SNORD123	small nucleolar RNA, C/D box 123	-1.9763	0.0000
63125	ENSG00000166971	AKTIP	AKT interacting protein	-1.9751	0.0000
63124	ENSG00000261575		C17orf58 pseudogene	-1.9749	0.0000
63123	ENSG00000124302	CHST8	carbohydrate sulfotransferase 8	-1.9745	0.0000
63122	ENSG00000227836		ribosomal protein S20 (RPS20) pseudogene	-1.9745	0.0000
63121	ENSG00000237862		novel transcript	-1.9744	0.0000
63120	ENSG00000196227	FAM217B	family with sequence similarity 217 member B	-1.9742	0.0000
63119	ENSG00000116704	SLC35D1	solute carrier family 35 member D1	-1.9740	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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