SHOGoiN Cell Methylome: GSM2773733
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773733 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M360 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000250768 | DPP3P1 | dipeptidyl peptidase 3 pseudogene 1 | 2.5850 | 0.0001 |
| 2 | ENSG00000229907 | DEFB108A | defensin beta 108A | 2.3219 | 0.0000 |
| 3 | ENSG00000250017 | tigger transposable element derived 1 (TIGD1) pseudogene | 2.3219 | 0.0006 | |
| 4 | ENSG00000249353 | NPM1P27 | nucleophosmin 1 pseudogene 27 | 2.2036 | 0.0000 |
| 5 | ENSG00000276810 | ribosomal protein L18a (RPL18A) pseudogene | 2.1610 | 0.0000 | |
| 6 | ENSG00000259169 | GNRHR2P1 | GNRHR2 pseudogene 1 | 2.1507 | 0.0000 |
| 7 | ENSG00000249921 | guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (GNB2L1) pseudogene | 2.0850 | 0.0000 | |
| 8 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 2.0278 | 0.0000 | |
| 9 | ENSG00000198398 | TMEM207 | transmembrane protein 207 | 2.0000 | 0.0040 |
| 10 | ENSG00000200355 | NA | 2.0000 | 0.0040 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000263813 | MIR3679 | microRNA 3679 | -2.0415 | 0.0000 |
| 63340 | ENSG00000207039 | NA | -2.0414 | 0.0000 | |
| 63339 | ENSG00000276753 | MIR6821 | microRNA 6821 | -2.0413 | 0.0000 |
| 63338 | ENSG00000170027 | YWHAG | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma | -2.0411 | 0.0000 |
| 63337 | ENSG00000201145 | RNA5SP175 | RNA, 5S ribosomal pseudogene 175 | -2.0409 | 0.0000 |
| 63336 | ENSG00000165355 | FBXO33 | F-box protein 33 | -2.0399 | 0.0000 |
| 63335 | ENSG00000274164 | RNA5SP439 | RNA, 5S ribosomal pseudogene 439 | -2.0399 | 0.0000 |
| 63334 | ENSG00000255285 | novel pseudogene | -2.0393 | 0.0000 | |
| 63333 | ENSG00000275836 | MIR6068 | microRNA 6068 | -2.0393 | 0.0000 |
| 63332 | ENSG00000115307 | AUP1 | AUP1 lipid droplet regulating VLDL assembly factor | -2.0388 | 0.0000 |
