SHOGoiN Cell Methylome: GSM2773733

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773733


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M360Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250768 DPP3P1 dipeptidyl peptidase 3 pseudogene 1 2.5850 0.0001
2 ENSG00000229907 DEFB108A defensin beta 108A 2.3219 0.0000
3 ENSG00000250017 tigger transposable element derived 1 (TIGD1) pseudogene 2.3219 0.0006
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.2036 0.0000
5 ENSG00000276810 ribosomal protein L18a (RPL18A) pseudogene 2.1610 0.0000
6 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 2.1507 0.0000
7 ENSG00000249921 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (GNB2L1) pseudogene 2.0850 0.0000
8 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0278 0.0000
9 ENSG00000198398 TMEM207 transmembrane protein 207 2.0000 0.0040
10 ENSG00000200355 NA 2.0000 0.0040

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000263813 MIR3679 microRNA 3679 -2.0415 0.0000
63340 ENSG00000207039 NA -2.0414 0.0000
63339 ENSG00000276753 MIR6821 microRNA 6821 -2.0413 0.0000
63338 ENSG00000170027 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma -2.0411 0.0000
63337 ENSG00000201145 RNA5SP175 RNA, 5S ribosomal pseudogene 175 -2.0409 0.0000
63336 ENSG00000165355 FBXO33 F-box protein 33 -2.0399 0.0000
63335 ENSG00000274164 RNA5SP439 RNA, 5S ribosomal pseudogene 439 -2.0399 0.0000
63334 ENSG00000255285 novel pseudogene -2.0393 0.0000
63333 ENSG00000275836 MIR6068 microRNA 6068 -2.0393 0.0000
63332 ENSG00000115307 AUP1 AUP1 lipid droplet regulating VLDL assembly factor -2.0388 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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