Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773733
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773733
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M360
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000250768
DPP3P1
DPP3 pseudogene 1
2.5850
0.0001
2
ENSG00000229907
DEFB108A
defensin beta 108A
2.3219
0.0000
3
ENSG00000250017
tigger transposable element derived 1 (TIGD1) pseudogene
2.3219
0.0006
4
ENSG00000249353
NPM1P27
nucleophosmin 1 pseudogene 27
2.2036
0.0000
5
ENSG00000276810
ribosomal protein L18a (RPL18A) pseudogene
2.1610
0.0000
6
ENSG00000259169
GNRHR2P1
GNRHR2 pseudogene 1
2.1507
0.0000
7
ENSG00000249921
guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (GNB2L1) pseudogene
2.0850
0.0000
8
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
2.0278
0.0000
9
ENSG00000198398
TMEM207
transmembrane protein 207
2.0000
0.0040
10
ENSG00000200355
Small nucleolar RNA SNORA72
2.0000
0.0040
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000236994
YBX1P9
Y-box binding protein 1 pseudogene 9
-1.9764
0.0000
63127
ENSG00000163516
ANKZF1
ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1
-1.9764
0.0000
63126
ENSG00000239112
SNORD123
small nucleolar RNA, C/D box 123
-1.9763
0.0000
63125
ENSG00000166971
AKTIP
AKT interacting protein
-1.9751
0.0000
63124
ENSG00000261575
C17orf58 pseudogene
-1.9749
0.0000
63123
ENSG00000124302
CHST8
carbohydrate sulfotransferase 8
-1.9745
0.0000
63122
ENSG00000227836
ribosomal protein S20 (RPS20) pseudogene
-1.9745
0.0000
63121
ENSG00000237862
novel transcript
-1.9744
0.0000
63120
ENSG00000196227
FAM217B
family with sequence similarity 217 member B
-1.9742
0.0000
63119
ENSG00000116704
SLC35D1
solute carrier family 35 member D1
-1.9740
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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