Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773733

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773733


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M360Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250768 DPP3P1 DPP3 pseudogene 1 2.5850 0.0001
2 ENSG00000229907 DEFB108A defensin beta 108A 2.3219 0.0000
3 ENSG00000250017 tigger transposable element derived 1 (TIGD1) pseudogene 2.3219 0.0006
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.2036 0.0000
5 ENSG00000276810 ribosomal protein L18a (RPL18A) pseudogene 2.1610 0.0000
6 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 2.1507 0.0000
7 ENSG00000249921 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (GNB2L1) pseudogene 2.0850 0.0000
8 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0278 0.0000
9 ENSG00000198398 TMEM207 transmembrane protein 207 2.0000 0.0040
10 ENSG00000200355 Small nucleolar RNA SNORA72 2.0000 0.0040

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000236994 YBX1P9 Y-box binding protein 1 pseudogene 9 -1.9764 0.0000
63127 ENSG00000163516 ANKZF1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 -1.9764 0.0000
63126 ENSG00000239112 SNORD123 small nucleolar RNA, C/D box 123 -1.9763 0.0000
63125 ENSG00000166971 AKTIP AKT interacting protein -1.9751 0.0000
63124 ENSG00000261575 C17orf58 pseudogene -1.9749 0.0000
63123 ENSG00000124302 CHST8 carbohydrate sulfotransferase 8 -1.9745 0.0000
63122 ENSG00000227836 ribosomal protein S20 (RPS20) pseudogene -1.9745 0.0000
63121 ENSG00000237862 novel transcript -1.9744 0.0000
63120 ENSG00000196227 FAM217B family with sequence similarity 217 member B -1.9742 0.0000
63119 ENSG00000116704 SLC35D1 solute carrier family 35 member D1 -1.9740 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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