SHOGoiN Cell Methylome: GSM2773734
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773734 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M361 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000254205 | novel transcript | 2.3219 | 0.0000 | |
| 2 | ENSG00000283412 | NA | 2.3219 | 0.0000 | |
| 3 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 2.2448 | 0.0000 |
| 4 | ENSG00000212259 | RNU6-308P | RNA, U6 small nuclear 308, pseudogene | 2.2146 | 0.0000 |
| 5 | ENSG00000284135 | MIR3654 | microRNA 3654 | 2.1258 | 0.0000 |
| 6 | ENSG00000249353 | NPM1P27 | nucleophosmin 1 pseudogene 27 | 2.1033 | 0.0000 |
| 7 | ENSG00000201423 | RN7SKP246 | RN7SK pseudogene 246 | 2.0000 | 0.0035 |
| 8 | ENSG00000207322 | RNU1-89P | RNA, U1 small nuclear 89, pseudogene | 2.0000 | 0.0035 |
| 9 | ENSG00000211974 | IGHV2-70D | immunoglobulin heavy variable 2-70D | 2.0000 | 0.0000 |
| 10 | ENSG00000234289 | H2BFS | H2B histone family member S | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000105866 | SP4 | Sp4 transcription factor | -2.0330 | 0.0000 |
| 63340 | ENSG00000256747 | novel transcript | -2.0327 | 0.0000 | |
| 63339 | ENSG00000233246 | novel transcript | -2.0325 | 0.0000 | |
| 63338 | ENSG00000272701 | MESTIT1 | MEST intronic transcript 1, antisense RNA | -2.0323 | 0.0000 |
| 63337 | ENSG00000197380 | DACT3 | dishevelled binding antagonist of beta catenin 3 | -2.0313 | 0.0000 |
| 63336 | ENSG00000169251 | NMD3 | NMD3 ribosome export adaptor | -2.0310 | 0.0000 |
| 63335 | ENSG00000234869 | novel transcript | -2.0306 | 0.0000 | |
| 63334 | ENSG00000107821 | KAZALD1 | Kazal type serine peptidase inhibitor domain 1 | -2.0304 | 0.0000 |
| 63333 | ENSG00000176842 | IRX5 | iroquois homeobox 5 | -2.0301 | 0.0000 |
| 63332 | ENSG00000156966 | B3GNT7 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 | -2.0301 | 0.0000 |
