Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773734

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773734 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M361	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000254205		novel transcript	2.3219	0.0000
2	ENSG00000283412		U6 spliceosomal RNA	2.3219	0.0000
3	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	2.2448	0.0000
4	ENSG00000212259	RNU6-308P	RNA, U6 small nuclear 308, pseudogene	2.2146	0.0000
5	ENSG00000284135	MIR3654	microRNA 3654	2.1258	0.0000
6	ENSG00000249353	NPM1P27	nucleophosmin 1 pseudogene 27	2.1033	0.0000
7	ENSG00000201423	RN7SKP246	RN7SK pseudogene 246	2.0000	0.0035
8	ENSG00000207322	RNU1-89P	RNA, U1 small nuclear 89, pseudogene	2.0000	0.0035
9	ENSG00000211974	IGHV2-70D	immunoglobulin heavy variable 2-70D	2.0000	0.0000
10	ENSG00000234289	H2BS1	H2B.S histone 1	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000266448		myelin transcription factor 1-like (MYT1L) pseudogene	-1.9767	0.0043
63127	ENSG00000234548	LINC02020	long intergenic non-protein coding RNA 2020	-1.9762	0.0000
63126	ENSG00000141655	TNFRSF11A	TNF receptor superfamily member 11a	-1.9762	0.0000
63125	ENSG00000198242	RPL23A	ribosomal protein L23a	-1.9761	0.0000
63124	ENSG00000261480	GOLGA8M	golgin A8 family member M	-1.9760	0.0000
63123	ENSG00000120738	EGR1	early growth response 1	-1.9756	0.0000
63122	ENSG00000161682	FAM171A2	family with sequence similarity 171 member A2	-1.9753	0.0000
63121	ENSG00000242888		ribosomal protein S2 (RPS2) pseudogene	-1.9751	0.0000
63120	ENSG00000238113	LINC01410	long intergenic non-protein coding RNA 1410	-1.9750	0.0000
63119	ENSG00000257341		novel protein	-1.9749	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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