Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773734
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773734
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M361
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000254205
novel transcript
2.3219
0.0000
2
ENSG00000283412
U6 spliceosomal RNA
2.3219
0.0000
3
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
2.2448
0.0000
4
ENSG00000212259
RNU6-308P
RNA, U6 small nuclear 308, pseudogene
2.2146
0.0000
5
ENSG00000284135
MIR3654
microRNA 3654
2.1258
0.0000
6
ENSG00000249353
NPM1P27
nucleophosmin 1 pseudogene 27
2.1033
0.0000
7
ENSG00000201423
RN7SKP246
RN7SK pseudogene 246
2.0000
0.0035
8
ENSG00000207322
RNU1-89P
RNA, U1 small nuclear 89, pseudogene
2.0000
0.0035
9
ENSG00000211974
IGHV2-70D
immunoglobulin heavy variable 2-70D
2.0000
0.0000
10
ENSG00000234289
H2BS1
H2B.S histone 1
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000266448
myelin transcription factor 1-like (MYT1L) pseudogene
-1.9767
0.0043
63127
ENSG00000234548
LINC02020
long intergenic non-protein coding RNA 2020
-1.9762
0.0000
63126
ENSG00000141655
TNFRSF11A
TNF receptor superfamily member 11a
-1.9762
0.0000
63125
ENSG00000198242
RPL23A
ribosomal protein L23a
-1.9761
0.0000
63124
ENSG00000261480
GOLGA8M
golgin A8 family member M
-1.9760
0.0000
63123
ENSG00000120738
EGR1
early growth response 1
-1.9756
0.0000
63122
ENSG00000161682
FAM171A2
family with sequence similarity 171 member A2
-1.9753
0.0000
63121
ENSG00000242888
ribosomal protein S2 (RPS2) pseudogene
-1.9751
0.0000
63120
ENSG00000238113
LINC01410
long intergenic non-protein coding RNA 1410
-1.9750
0.0000
63119
ENSG00000257341
novel protein
-1.9749
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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