Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773734

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773734


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M361Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254205 novel transcript 2.3219 0.0000
2 ENSG00000283412 U6 spliceosomal RNA 2.3219 0.0000
3 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.2448 0.0000
4 ENSG00000212259 RNU6-308P RNA, U6 small nuclear 308, pseudogene 2.2146 0.0000
5 ENSG00000284135 MIR3654 microRNA 3654 2.1258 0.0000
6 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1033 0.0000
7 ENSG00000201423 RN7SKP246 RN7SK pseudogene 246 2.0000 0.0035
8 ENSG00000207322 RNU1-89P RNA, U1 small nuclear 89, pseudogene 2.0000 0.0035
9 ENSG00000211974 IGHV2-70D immunoglobulin heavy variable 2-70D 2.0000 0.0000
10 ENSG00000234289 H2BS1 H2B.S histone 1 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000266448 myelin transcription factor 1-like (MYT1L) pseudogene -1.9767 0.0043
63127 ENSG00000234548 LINC02020 long intergenic non-protein coding RNA 2020 -1.9762 0.0000
63126 ENSG00000141655 TNFRSF11A TNF receptor superfamily member 11a -1.9762 0.0000
63125 ENSG00000198242 RPL23A ribosomal protein L23a -1.9761 0.0000
63124 ENSG00000261480 GOLGA8M golgin A8 family member M -1.9760 0.0000
63123 ENSG00000120738 EGR1 early growth response 1 -1.9756 0.0000
63122 ENSG00000161682 FAM171A2 family with sequence similarity 171 member A2 -1.9753 0.0000
63121 ENSG00000242888 ribosomal protein S2 (RPS2) pseudogene -1.9751 0.0000
63120 ENSG00000238113 LINC01410 long intergenic non-protein coding RNA 1410 -1.9750 0.0000
63119 ENSG00000257341 novel protein -1.9749 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...