SHOGoiN Cell Methylome: GSM2773734

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773734


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M361Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254205 novel transcript 2.3219 0.0000
2 ENSG00000283412 NA 2.3219 0.0000
3 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.2448 0.0000
4 ENSG00000212259 RNU6-308P RNA, U6 small nuclear 308, pseudogene 2.2146 0.0000
5 ENSG00000284135 MIR3654 microRNA 3654 2.1258 0.0000
6 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1033 0.0000
7 ENSG00000201423 RN7SKP246 RN7SK pseudogene 246 2.0000 0.0035
8 ENSG00000207322 RNU1-89P RNA, U1 small nuclear 89, pseudogene 2.0000 0.0035
9 ENSG00000211974 IGHV2-70D immunoglobulin heavy variable 2-70D 2.0000 0.0000
10 ENSG00000234289 H2BFS H2B histone family member S 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000105866 SP4 Sp4 transcription factor -2.0330 0.0000
63340 ENSG00000256747 novel transcript -2.0327 0.0000
63339 ENSG00000233246 novel transcript -2.0325 0.0000
63338 ENSG00000272701 MESTIT1 MEST intronic transcript 1, antisense RNA -2.0323 0.0000
63337 ENSG00000197380 DACT3 dishevelled binding antagonist of beta catenin 3 -2.0313 0.0000
63336 ENSG00000169251 NMD3 NMD3 ribosome export adaptor -2.0310 0.0000
63335 ENSG00000234869 novel transcript -2.0306 0.0000
63334 ENSG00000107821 KAZALD1 Kazal type serine peptidase inhibitor domain 1 -2.0304 0.0000
63333 ENSG00000176842 IRX5 iroquois homeobox 5 -2.0301 0.0000
63332 ENSG00000156966 B3GNT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 -2.0301 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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