SHOGoiN Cell Methylome: GSM2773735

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773735


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M362Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.6343 0.0000
2 ENSG00000270147 novel transcript 2.3219 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.2459 0.0000
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.2321 0.0000
5 ENSG00000201140 RN7SKP128 RN7SK pseudogene 128 2.0000 0.0000
6 ENSG00000238777 RNU7-141P RNA, U7 small nuclear 141 pseudogene 2.0000 0.0000
7 ENSG00000267146 novel transcript, antisense to WDR7 2.0000 0.0042
8 ENSG00000270741 PRELID3BP8 PRELI domain containing 3B pseudogene 8 2.0000 0.0042
9 ENSG00000282855 INTS3 and NABP interacting protein (INIP) pseudogene 2.0000 0.0000
10 ENSG00000257165 novel transcript 1.9534 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000138182 KIF20B kinesin family member 20B -2.0106 0.0000
63340 ENSG00000274139 novel transcript -2.0105 0.0000
63339 ENSG00000202242 RNU6-1276P RNA, U6 small nuclear 1276, pseudogene -2.0104 0.0000
63336 ENSG00000202408 RNU1-122P RNA, U1 small nuclear 122, pseudogene -2.0100 0.0000
63335 ENSG00000142634 EFHD2 EF-hand domain family member D2 -2.0097 0.0000
63334 ENSG00000129911 KLF16 Kruppel like factor 16 -2.0097 0.0000
63333 ENSG00000156206 CFAP161 cilia and flagella associated protein 161 -2.0094 0.0000
63332 ENSG00000140265 ZSCAN29 zinc finger and SCAN domain containing 29 -2.0093 0.0000
10 ENSG00000257165 novel transcript 1.9534 0.0000
9 ENSG00000282855 INTS3 and NABP interacting protein (INIP) pseudogene 2.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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