SHOGoiN Cell Methylome: GSM2773735
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773735 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M362 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000229638 | RPL4P4 | ribosomal protein L4 pseudogene 4 | 2.6343 | 0.0000 |
| 2 | ENSG00000270147 | novel transcript | 2.3219 | 0.0000 | |
| 3 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 2.2459 | 0.0000 | |
| 4 | ENSG00000249353 | NPM1P27 | nucleophosmin 1 pseudogene 27 | 2.2321 | 0.0000 |
| 5 | ENSG00000201140 | RN7SKP128 | RN7SK pseudogene 128 | 2.0000 | 0.0000 |
| 6 | ENSG00000238777 | RNU7-141P | RNA, U7 small nuclear 141 pseudogene | 2.0000 | 0.0000 |
| 7 | ENSG00000267146 | novel transcript, antisense to WDR7 | 2.0000 | 0.0042 | |
| 8 | ENSG00000270741 | PRELID3BP8 | PRELI domain containing 3B pseudogene 8 | 2.0000 | 0.0042 |
| 9 | ENSG00000282855 | INTS3 and NABP interacting protein (INIP) pseudogene | 2.0000 | 0.0000 | |
| 10 | ENSG00000257165 | novel transcript | 1.9534 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000138182 | KIF20B | kinesin family member 20B | -2.0106 | 0.0000 |
| 63340 | ENSG00000274139 | novel transcript | -2.0105 | 0.0000 | |
| 63339 | ENSG00000202242 | RNU6-1276P | RNA, U6 small nuclear 1276, pseudogene | -2.0104 | 0.0000 |
| 63336 | ENSG00000202408 | RNU1-122P | RNA, U1 small nuclear 122, pseudogene | -2.0100 | 0.0000 |
| 63335 | ENSG00000142634 | EFHD2 | EF-hand domain family member D2 | -2.0097 | 0.0000 |
| 63334 | ENSG00000129911 | KLF16 | Kruppel like factor 16 | -2.0097 | 0.0000 |
| 63333 | ENSG00000156206 | CFAP161 | cilia and flagella associated protein 161 | -2.0094 | 0.0000 |
| 63332 | ENSG00000140265 | ZSCAN29 | zinc finger and SCAN domain containing 29 | -2.0093 | 0.0000 |
| 10 | ENSG00000257165 | novel transcript | 1.9534 | 0.0000 | |
| 9 | ENSG00000282855 | INTS3 and NABP interacting protein (INIP) pseudogene | 2.0000 | 0.0000 |
