Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773735

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773735 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M362	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	2.6343	0.0000
2	ENSG00000270147		novel transcript	2.3219	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.2459	0.0000
4	ENSG00000249353	NPM1P27	nucleophosmin 1 pseudogene 27	2.2321	0.0000
5	ENSG00000201140	RN7SKP128	RN7SK pseudogene 128	2.0000	0.0000
6	ENSG00000238777	RNU7-141P	RNA, U7 small nuclear 141 pseudogene	2.0000	0.0000
7	ENSG00000267146		novel transcript, antisense to WDR7	2.0000	0.0042
8	ENSG00000270741	PRELID3BP8	PRELI domain containing 3B pseudogene 8	2.0000	0.0042
9	ENSG00000282855		INTS3 and NABP interacting protein (INIP) pseudogene	2.0000	0.0000
10	ENSG00000257165		novel transcript	1.9534	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000264569	DCXR-DT	DCXR divergent transcript	-1.9715	0.0000
63172	ENSG00000244642	RN7SL396P	RNA, 7SL, cytoplasmic 396, pseudogene	-1.9713	0.0000
63171	ENSG00000264655	PPIAP54	peptidylprolyl isomerase A pseudogene 54	-1.9713	0.0000
63170	ENSG00000086159	AQP6	aquaporin 6	-1.9709	0.0000
63169	ENSG00000130822	PNCK	pregnancy up-regulated nonubiquitous CaM kinase	-1.9709	0.0000
63168	ENSG00000138166	DUSP5	dual specificity phosphatase 5	-1.9705	0.0000
63167	ENSG00000258777	HIF1A-AS1	HIF1A antisense RNA 1	-1.9703	0.0000
63166	ENSG00000137942	FNBP1L	formin binding protein 1 like	-1.9702	0.0000
63165	ENSG00000278017		novel transcript, antisense to ZCCHC2	-1.9695	0.0000
63164	ENSG00000275589		NA	-1.9694	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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