Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773735

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773735


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M362Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.6343 0.0000
2 ENSG00000270147 novel transcript 2.3219 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.2459 0.0000
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.2321 0.0000
5 ENSG00000201140 RN7SKP128 RN7SK pseudogene 128 2.0000 0.0000
6 ENSG00000238777 RNU7-141P RNA, U7 small nuclear 141 pseudogene 2.0000 0.0000
7 ENSG00000267146 novel transcript, antisense to WDR7 2.0000 0.0042
8 ENSG00000270741 PRELID3BP8 PRELI domain containing 3B pseudogene 8 2.0000 0.0042
9 ENSG00000282855 INTS3 and NABP interacting protein (INIP) pseudogene 2.0000 0.0000
10 ENSG00000257165 novel transcript 1.9534 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000169900 PYDC1 pyrin domain containing 1 -1.9829 0.0000
63220 ENSG00000239389 PCDHA13 protocadherin alpha 13 -1.9828 0.0000
63219 ENSG00000226065 ZBTB45P2 zinc finger and BTB domain containing 45 pseudogene 2 -1.9826 0.0021
63218 ENSG00000268595 novel transcript, antisense to SIGLECL1 -1.9825 0.0000
63217 ENSG00000265176 MIR3202-1 microRNA 3202-1 -1.9817 0.0000
63216 ENSG00000112276 BVES blood vessel epicardial substance -1.9815 0.0000
63215 ENSG00000146085 MMUT methylmalonyl-CoA mutase -1.9808 0.0059
63214 ENSG00000201440 RNA5SP515 RNA, 5S ribosomal pseudogene 515 -1.9807 0.0000
63213 ENSG00000237950 novel transcript -1.9803 0.0000
63212 ENSG00000179476 C14orf28 chromosome 14 open reading frame 28 -1.9802 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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