Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773735
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773735
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M362
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000229638
RPL4P4
ribosomal protein L4 pseudogene 4
2.6343
0.0000
2
ENSG00000270147
novel transcript
2.3219
0.0000
3
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
2.2459
0.0000
4
ENSG00000249353
NPM1P27
nucleophosmin 1 pseudogene 27
2.2321
0.0000
5
ENSG00000201140
RN7SKP128
RN7SK pseudogene 128
2.0000
0.0000
6
ENSG00000238777
RNU7-141P
RNA, U7 small nuclear 141 pseudogene
2.0000
0.0000
7
ENSG00000267146
novel transcript, antisense to WDR7
2.0000
0.0042
8
ENSG00000270741
PRELID3BP8
PRELI domain containing 3B pseudogene 8
2.0000
0.0042
9
ENSG00000282855
INTS3 and NABP interacting protein (INIP) pseudogene
2.0000
0.0000
10
ENSG00000257165
novel transcript
1.9534
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000264569
DCXR-DT
DCXR divergent transcript
-1.9715
0.0000
63172
ENSG00000244642
RN7SL396P
RNA, 7SL, cytoplasmic 396, pseudogene
-1.9713
0.0000
63171
ENSG00000264655
PPIAP54
peptidylprolyl isomerase A pseudogene 54
-1.9713
0.0000
63170
ENSG00000086159
AQP6
aquaporin 6
-1.9709
0.0000
63169
ENSG00000130822
PNCK
pregnancy up-regulated nonubiquitous CaM kinase
-1.9709
0.0000
63168
ENSG00000138166
DUSP5
dual specificity phosphatase 5
-1.9705
0.0000
63167
ENSG00000258777
HIF1A-AS1
HIF1A antisense RNA 1
-1.9703
0.0000
63166
ENSG00000137942
FNBP1L
formin binding protein 1 like
-1.9702
0.0000
63165
ENSG00000278017
novel transcript, antisense to ZCCHC2
-1.9695
0.0000
63164
ENSG00000275589
NA
-1.9694
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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