Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773735

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773735 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M362	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	2.6343	0.0000
2	ENSG00000270147		novel transcript	2.3219	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.2459	0.0000
4	ENSG00000249353	NPM1P27	nucleophosmin 1 pseudogene 27	2.2321	0.0000
5	ENSG00000201140	RN7SKP128	RN7SK pseudogene 128	2.0000	0.0000
6	ENSG00000238777	RNU7-141P	RNA, U7 small nuclear 141 pseudogene	2.0000	0.0000
7	ENSG00000267146		novel transcript, antisense to WDR7	2.0000	0.0042
8	ENSG00000270741	PRELID3BP8	PRELI domain containing 3B pseudogene 8	2.0000	0.0042
9	ENSG00000282855		INTS3 and NABP interacting protein (INIP) pseudogene	2.0000	0.0000
10	ENSG00000257165		novel transcript	1.9534	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000169900	PYDC1	pyrin domain containing 1	-1.9829	0.0000
63220	ENSG00000239389	PCDHA13	protocadherin alpha 13	-1.9828	0.0000
63219	ENSG00000226065	ZBTB45P2	zinc finger and BTB domain containing 45 pseudogene 2	-1.9826	0.0021
63218	ENSG00000268595		novel transcript, antisense to SIGLECL1	-1.9825	0.0000
63217	ENSG00000265176	MIR3202-1	microRNA 3202-1	-1.9817	0.0000
63216	ENSG00000112276	BVES	blood vessel epicardial substance	-1.9815	0.0000
63215	ENSG00000146085	MMUT	methylmalonyl-CoA mutase	-1.9808	0.0059
63214	ENSG00000201440	RNA5SP515	RNA, 5S ribosomal pseudogene 515	-1.9807	0.0000
63213	ENSG00000237950		novel transcript	-1.9803	0.0000
63212	ENSG00000179476	C14orf28	chromosome 14 open reading frame 28	-1.9802	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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