Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773735

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773735


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M362Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.6343 0.0000
2 ENSG00000270147 novel transcript 2.3219 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.2459 0.0000
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.2321 0.0000
5 ENSG00000201140 RN7SKP128 RN7SK pseudogene 128 2.0000 0.0000
6 ENSG00000238777 RNU7-141P RNA, U7 small nuclear 141 pseudogene 2.0000 0.0000
7 ENSG00000267146 novel transcript, antisense to WDR7 2.0000 0.0042
8 ENSG00000270741 PRELID3BP8 PRELI domain containing 3B pseudogene 8 2.0000 0.0042
9 ENSG00000282855 INTS3 and NABP interacting protein (INIP) pseudogene 2.0000 0.0000
10 ENSG00000257165 novel transcript 1.9534 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000264569 DCXR-DT DCXR divergent transcript -1.9715 0.0000
63172 ENSG00000244642 RN7SL396P RNA, 7SL, cytoplasmic 396, pseudogene -1.9713 0.0000
63171 ENSG00000264655 PPIAP54 peptidylprolyl isomerase A pseudogene 54 -1.9713 0.0000
63170 ENSG00000086159 AQP6 aquaporin 6 -1.9709 0.0000
63169 ENSG00000130822 PNCK pregnancy up-regulated nonubiquitous CaM kinase -1.9709 0.0000
63168 ENSG00000138166 DUSP5 dual specificity phosphatase 5 -1.9705 0.0000
63167 ENSG00000258777 HIF1A-AS1 HIF1A antisense RNA 1 -1.9703 0.0000
63166 ENSG00000137942 FNBP1L formin binding protein 1 like -1.9702 0.0000
63165 ENSG00000278017 novel transcript, antisense to ZCCHC2 -1.9695 0.0000
63164 ENSG00000275589 NA -1.9694 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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