Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773736

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773736


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M363Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.6481 0.0000
2 ENSG00000225397 pseudogene similar to part of ornithine aminotransferase (gyrate atrophy) (OAT) 2.3219 0.0000
3 ENSG00000226680 novel transcript 2.3219 0.0004
4 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.0446 0.0000
5 ENSG00000213046 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 2.0000 0.0026
6 ENSG00000261584 novel transcript 2.0000 0.0026
7 ENSG00000282865 TEC 2.0000 0.0000
8 ENSG00000284135 MIR3654 microRNA 3654 1.9757 0.0000
9 ENSG00000134538 SLCO1B1 solute carrier organic anion transporter family member 1B1 1.8962 0.0000
10 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 1.6952 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000252034 RNY4P37 RNY4 pseudogene 37 -2.0022 0.0000
63127 ENSG00000200462 RNU6-727P RNA, U6 small nuclear 727, pseudogene -2.0014 0.0000
63126 ENSG00000106415 GLCCI1 glucocorticoid induced 1 -2.0012 0.0000
63125 ENSG00000187268 FAM9C family with sequence similarity 9 member C -2.0011 0.0000
63124 ENSG00000123999 INHA inhibin subunit alpha -2.0011 0.0000
63123 ENSG00000188277 C15orf62 chromosome 15 open reading frame 62 -2.0008 0.0000
63122 ENSG00000235749 novel transcript, antisense to OR13G1, OR6F1 and OR14A2 -2.0003 0.0000
63121 ENSG00000138316 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 -2.0003 0.0000
63120 ENSG00000276138 U6 spliceosomal RNA -2.0000 1.0000
63119 ENSG00000273825 otopetrin 1 (OTOP1) pseudogene -2.0000 0.1598

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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