Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773737

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773737


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M364Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252922 RNU6-365P RNA, U6 small nuclear 365, pseudogene 2.3219 0.0006
2 ENSG00000258648 UBE2CP1 ubiquitin conjugating enzyme E2 C pseudogene 1 2.3219 0.0006
3 ENSG00000260973 novel transcript 2.3219 0.0000
4 ENSG00000279706 TEC 2.2925 0.0000
5 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0984 0.0000
6 ENSG00000255215 OR4R1P olfactory receptor family 4 subfamily R member 1 pseudogene 2.0566 0.0000
7 ENSG00000174325 DIRC1 disrupted in renal carcinoma 1 2.0000 0.0037
9 ENSG00000213285 RPL23AP45 ribosomal protein L23a pseudogene 45 2.0000 0.0037
10 ENSG00000233254 RPL21P134 ribosomal protein L21 pseudogene 134 2.0000 0.0000
63119 ENSG00000256747 novel transcript -2.1128 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000225864 HLA complex group 4 pseudogene 11 -2.1179 0.0000
63127 ENSG00000259173 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G (ATP5L) pseudogene -2.1173 0.0000
63126 ENSG00000264755 MIR3131 microRNA 3131 -2.1167 0.0000
63125 ENSG00000176998 HCG4 HLA complex group 4 -2.1159 0.0000
63124 ENSG00000159761 C16orf86 chromosome 16 open reading frame 86 -2.1153 0.0000
63123 ENSG00000253027 Small nucleolar RNA SNORA70 -2.1150 0.0000
63122 ENSG00000230751 novel transcript -2.1150 0.0000
63121 ENSG00000119138 KLF9 Kruppel like factor 9 -2.1143 0.0000
63120 ENSG00000187658 C5orf52 chromosome 5 open reading frame 52 -2.1138 0.0000
63119 ENSG00000256747 novel transcript -2.1128 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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