SHOGoiN Cell Methylome: GSM2773737

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773737


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M364Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252922 RNU6-365P RNA, U6 small nuclear 365, pseudogene 2.3219 0.0006
2 ENSG00000258648 UBE2CP1 ubiquitin conjugating enzyme E2 C pseudogene 1 2.3219 0.0006
3 ENSG00000260973 novel transcript 2.3219 0.0000
4 ENSG00000279706 TEC 2.2925 0.0000
5 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0984 0.0000
6 ENSG00000255215 OR4R1P olfactory receptor family 4 subfamily R member 1 pseudogene 2.0566 0.0000
7 ENSG00000174325 DIRC1 disrupted in renal carcinoma 1 2.0000 0.0037
9 ENSG00000213285 RPL23AP45 ribosomal protein L23a pseudogene 45 2.0000 0.0037
10 ENSG00000233254 RPL21P134 ribosomal protein L21 pseudogene 134 2.0000 0.0000
63332 ENSG00000183783 KCTD8 potassium channel tetramerization domain containing 8 -2.1784 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000233332 novel transcript -2.1827 0.0000
63340 ENSG00000156381 ANKRD9 ankyrin repeat domain 9 -2.1821 0.0000
63339 ENSG00000243738 RN7SL181P RNA, 7SL, cytoplasmic 181, pseudogene -2.1812 0.0000
63338 ENSG00000071994 PDCD2 programmed cell death 2 -2.1801 0.0000
63337 ENSG00000279422 TEC -2.1795 0.0000
63336 ENSG00000171396 KRTAP4-4 keratin associated protein 4-4 -2.1795 0.0008
63335 ENSG00000197872 FAM49A family with sequence similarity 49 member A -2.1794 0.0000
63334 ENSG00000235601 BARX1-DT BARX1 divergent transcript -2.1789 0.0000
63333 ENSG00000274139 novel transcript -2.1786 0.0000
63332 ENSG00000183783 KCTD8 potassium channel tetramerization domain containing 8 -2.1784 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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