SHOGoiN Cell Methylome: GSM2773738

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773738


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M365Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.5111 0.0000
2 ENSG00000212549 RNA5SP354 RNA, 5S ribosomal pseudogene 354 2.3219 0.0000
3 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.3219 0.0004
4 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.3051 0.0000
5 ENSG00000276183 NA 2.2440 0.0000
6 ENSG00000224326 novel transcript 2.0897 0.0000
7 ENSG00000261036 novel transcript 2.0850 0.0000
8 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.0000 0.0027
9 ENSG00000231238 LINC00349 long intergenic non-protein coding RNA 349 2.0000 0.0027
10 ENSG00000233882 LINC01680 long intergenic non-protein coding RNA 1680 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000127418 FGFRL1 fibroblast growth factor receptor like 1 -2.1343 0.0000
63340 ENSG00000199047 MIR378A microRNA 378a -2.1338 0.0000
63339 ENSG00000207942 MIR136 microRNA 136 -2.1331 0.0000
63338 ENSG00000168148 HIST3H3 histone cluster 3 H3 -2.1320 0.0000
63337 ENSG00000147676 MAL2 mal, T cell differentiation protein 2 (gene/pseudogene) -2.1316 0.0000
63336 ENSG00000137075 RNF38 ring finger protein 38 -2.1312 0.0000
63335 ENSG00000234132 novel transcript, antisense CACNA1S -2.1311 0.0000
63334 ENSG00000237371 novel transcript -2.1311 0.0000
63333 ENSG00000227533 SLC2A1-AS1 SLC2A1 antisense RNA 1 -2.1309 0.0000
63332 ENSG00000207101 NA -2.1306 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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