Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773738

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773738


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M365Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.5111 0.0000
2 ENSG00000212549 RNA5SP354 RNA, 5S ribosomal pseudogene 354 2.3219 0.0000
3 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.3219 0.0004
4 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.3051 0.0000
5 ENSG00000276183 U6 spliceosomal RNA 2.2440 0.0000
6 ENSG00000224326 novel transcript 2.0897 0.0000
7 ENSG00000261036 novel transcript 2.0850 0.0000
8 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.0000 0.0027
9 ENSG00000231238 LINC00349 long intergenic non-protein coding RNA 349 2.0000 0.0027
10 ENSG00000233882 LINC01680 long intergenic non-protein coding RNA 1680 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234614 C2CD4D-AS1 C2CD4D and THEM5 antisense RNA 1 -2.0694 0.0000
63127 ENSG00000201134 Y RNA -2.0694 0.0000
63126 ENSG00000173598 NUDT4 nudix hydrolase 4 -2.0691 0.0000
63125 ENSG00000251788 RNU5A-7P RNA, U5A small nuclear 7, pseudogene -2.0690 0.0000
63124 ENSG00000228873 novel transcript -2.0683 0.0000
63123 ENSG00000201142 RNU1-151P RNA, U1 small nuclear 151, pseudogene -2.0682 0.0000
63122 ENSG00000115350 POLE4 DNA polymerase epsilon 4, accessory subunit -2.0678 0.0000
63121 ENSG00000235204 novel transcript -2.0677 0.0000
63120 ENSG00000212327 RNU6-882P RNA, U6 small nuclear 882, pseudogene -2.0675 0.0000
63119 ENSG00000180592 SKIDA1 SKI/DACH domain containing 1 -2.0664 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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