SHOGoiN Cell Methylome: GSM2773739

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773739


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M366Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276003 NA 3.1699 0.0000
2 ENSG00000276738 zinc finger protein 799 (ZNF799) pseudogene 2.8873 0.0000
3 ENSG00000278580 piggyBac transposable element derived 4 (PGBD4) pseudogene 2.8774 0.0000
4 ENSG00000225715 proteasome (prosome, macropain) subunit, alpha type, 1 (PSMA1) pseudogene 2.8074 0.0000
5 ENSG00000257845 LINC02294 long intergenic non-protein coding RNA 2294 2.8074 0.0000
6 ENSG00000280056 tec 2.8074 0.0000
7 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.7565 0.0000
8 ENSG00000208839 SNORA35 small nucleolar RNA, H/ACA box 35 2.5850 0.0000
9 ENSG00000275567 novel transcript, sense intronic to ABCC9 2.5850 0.0000
10 ENSG00000228519 RAN binding protein 1 pseudogene 2.4853 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000283065 kinase suppressor of ras 1 (KSR1) pseudogene -2.2878 0.0000
63340 ENSG00000226716 novel transcript -2.2876 0.0000
63339 ENSG00000273765 novel transcript -2.2876 0.0000
63338 ENSG00000160013 PTGIR prostaglandin I2 receptor -2.2867 0.0000
63337 ENSG00000151332 MBIP MAP3K12 binding inhibitory protein 1 -2.2867 0.0000
63336 ENSG00000279441 TEC -2.2854 0.0000
63335 ENSG00000261444 MPV17 mitochondrial membrane protein-like (MPV17L) pseudogene -2.2854 0.0000
63334 ENSG00000103174 NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase -2.2842 0.0000
63333 ENSG00000170161 novel transcript -2.2841 0.0000
63332 ENSG00000183837 PNMA3 PNMA family member 3 -2.2835 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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