Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773739

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773739 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M366	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000276003		NA	3.1699	0.0000
2	ENSG00000276738		zinc finger protein 799 (ZNF799) pseudogene	2.8873	0.0000
3	ENSG00000278580		piggyBac transposable element derived 4 (PGBD4) pseudogene	2.8774	0.0000
4	ENSG00000225715	PSMA1P1	PSMA1 pseudogene 1	2.8074	0.0000
5	ENSG00000257845	LINC02294	long intergenic non-protein coding RNA 2294	2.8074	0.0000
6	ENSG00000280056		tec	2.8074	0.0000
7	ENSG00000229132	EIF4A1P10	eukaryotic translation initiation factor 4A1 pseudogene 10	2.7565	0.0000
8	ENSG00000208839	SNORA35	small nucleolar RNA, H/ACA box 35	2.5850	0.0000
9	ENSG00000275567		novel transcript, sense intronic to ABCC9	2.5850	0.0000
10	ENSG00000228519	RANBP1P1	RANBP1 pseudogene 1	2.4853	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000279172		TEC	-2.2147	0.0000
63127	ENSG00000279025		TEC	-2.2146	0.3801
63126	ENSG00000206970	RNU6-474P	RNA, U6 small nuclear 474, pseudogene	-2.2146	0.3801
63125	ENSG00000284266	MIR4534	microRNA 4534	-2.2140	0.0000
63124	ENSG00000230157	ATP5MC1P1	ATP synthase membrane subunit c locus 1 pseudogene 1	-2.2135	0.0000
63123	ENSG00000266240	MIR5091	microRNA 5091	-2.2133	0.0000
63122	ENSG00000266655	MIR3908	microRNA 3908	-2.2131	0.0000
63121	ENSG00000238649	SNORD42A	small nucleolar RNA, C/D box 42A	-2.2130	0.0000
63120	ENSG00000054148	PHPT1	phosphohistidine phosphatase 1	-2.2130	0.0000
63119	ENSG00000160606	TLCD1	TLC domain containing 1	-2.2121	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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