SHOGoiN Cell Methylome: GSM2773739
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773739 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M366 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000276003 | NA | 3.1699 | 0.0000 | |
| 2 | ENSG00000276738 | zinc finger protein 799 (ZNF799) pseudogene | 2.8873 | 0.0000 | |
| 3 | ENSG00000278580 | piggyBac transposable element derived 4 (PGBD4) pseudogene | 2.8774 | 0.0000 | |
| 4 | ENSG00000225715 | proteasome (prosome, macropain) subunit, alpha type, 1 (PSMA1) pseudogene | 2.8074 | 0.0000 | |
| 5 | ENSG00000257845 | LINC02294 | long intergenic non-protein coding RNA 2294 | 2.8074 | 0.0000 |
| 6 | ENSG00000280056 | tec | 2.8074 | 0.0000 | |
| 7 | ENSG00000229132 | EIF4A1P10 | eukaryotic translation initiation factor 4A1 pseudogene 10 | 2.7565 | 0.0000 |
| 8 | ENSG00000208839 | SNORA35 | small nucleolar RNA, H/ACA box 35 | 2.5850 | 0.0000 |
| 9 | ENSG00000275567 | novel transcript, sense intronic to ABCC9 | 2.5850 | 0.0000 | |
| 10 | ENSG00000228519 | RAN binding protein 1 pseudogene | 2.4853 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000283065 | kinase suppressor of ras 1 (KSR1) pseudogene | -2.2878 | 0.0000 | |
| 63340 | ENSG00000226716 | novel transcript | -2.2876 | 0.0000 | |
| 63339 | ENSG00000273765 | novel transcript | -2.2876 | 0.0000 | |
| 63338 | ENSG00000160013 | PTGIR | prostaglandin I2 receptor | -2.2867 | 0.0000 |
| 63337 | ENSG00000151332 | MBIP | MAP3K12 binding inhibitory protein 1 | -2.2867 | 0.0000 |
| 63336 | ENSG00000279441 | TEC | -2.2854 | 0.0000 | |
| 63335 | ENSG00000261444 | MPV17 mitochondrial membrane protein-like (MPV17L) pseudogene | -2.2854 | 0.0000 | |
| 63334 | ENSG00000103174 | NAGPA | N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase | -2.2842 | 0.0000 |
| 63333 | ENSG00000170161 | novel transcript | -2.2841 | 0.0000 | |
| 63332 | ENSG00000183837 | PNMA3 | PNMA family member 3 | -2.2835 | 0.0000 |
