Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773739

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773739


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M366Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276003 NA 3.1699 0.0000
2 ENSG00000276738 zinc finger protein 799 (ZNF799) pseudogene 2.8873 0.0000
3 ENSG00000278580 piggyBac transposable element derived 4 (PGBD4) pseudogene 2.8774 0.0000
4 ENSG00000225715 PSMA1P1 PSMA1 pseudogene 1 2.8074 0.0000
5 ENSG00000257845 LINC02294 long intergenic non-protein coding RNA 2294 2.8074 0.0000
6 ENSG00000280056 tec 2.8074 0.0000
7 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.7565 0.0000
8 ENSG00000208839 SNORA35 small nucleolar RNA, H/ACA box 35 2.5850 0.0000
9 ENSG00000275567 novel transcript, sense intronic to ABCC9 2.5850 0.0000
10 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.4853 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000279172 TEC -2.2147 0.0000
63127 ENSG00000279025 TEC -2.2146 0.3801
63126 ENSG00000206970 RNU6-474P RNA, U6 small nuclear 474, pseudogene -2.2146 0.3801
63125 ENSG00000284266 MIR4534 microRNA 4534 -2.2140 0.0000
63124 ENSG00000230157 ATP5MC1P1 ATP synthase membrane subunit c locus 1 pseudogene 1 -2.2135 0.0000
63123 ENSG00000266240 MIR5091 microRNA 5091 -2.2133 0.0000
63122 ENSG00000266655 MIR3908 microRNA 3908 -2.2131 0.0000
63121 ENSG00000238649 SNORD42A small nucleolar RNA, C/D box 42A -2.2130 0.0000
63120 ENSG00000054148 PHPT1 phosphohistidine phosphatase 1 -2.2130 0.0000
63119 ENSG00000160606 TLCD1 TLC domain containing 1 -2.2121 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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