Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773739
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773739
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M366
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000276003
NA
3.1699
0.0000
2
ENSG00000276738
zinc finger protein 799 (ZNF799) pseudogene
2.8873
0.0000
3
ENSG00000278580
piggyBac transposable element derived 4 (PGBD4) pseudogene
2.8774
0.0000
4
ENSG00000225715
PSMA1P1
PSMA1 pseudogene 1
2.8074
0.0000
5
ENSG00000257845
LINC02294
long intergenic non-protein coding RNA 2294
2.8074
0.0000
6
ENSG00000280056
tec
2.8074
0.0000
7
ENSG00000229132
EIF4A1P10
eukaryotic translation initiation factor 4A1 pseudogene 10
2.7565
0.0000
8
ENSG00000208839
SNORA35
small nucleolar RNA, H/ACA box 35
2.5850
0.0000
9
ENSG00000275567
novel transcript, sense intronic to ABCC9
2.5850
0.0000
10
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
2.4853
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000279172
TEC
-2.2147
0.0000
63127
ENSG00000279025
TEC
-2.2146
0.3801
63126
ENSG00000206970
RNU6-474P
RNA, U6 small nuclear 474, pseudogene
-2.2146
0.3801
63125
ENSG00000284266
MIR4534
microRNA 4534
-2.2140
0.0000
63124
ENSG00000230157
ATP5MC1P1
ATP synthase membrane subunit c locus 1 pseudogene 1
-2.2135
0.0000
63123
ENSG00000266240
MIR5091
microRNA 5091
-2.2133
0.0000
63122
ENSG00000266655
MIR3908
microRNA 3908
-2.2131
0.0000
63121
ENSG00000238649
SNORD42A
small nucleolar RNA, C/D box 42A
-2.2130
0.0000
63120
ENSG00000054148
PHPT1
phosphohistidine phosphatase 1
-2.2130
0.0000
63119
ENSG00000160606
TLCD1
TLC domain containing 1
-2.2121
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...