SHOGoiN Cell Methylome: GSM2773740
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773740 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M367 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000253108 | novel transcript | 3.3219 | 0.0000 | |
| 2 | ENSG00000283463 | HSFX4 | heat shock transcription factor family, X-linked member 4 | 3.1699 | 0.0000 |
| 3 | ENSG00000254482 | chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene | 3.0000 | 0.0000 | |
| 4 | ENSG00000252959 | RNA5SP170 | RNA, 5S ribosomal pseudogene 170 | 2.7438 | 0.0000 |
| 5 | ENSG00000218175 | ribosomal protein, large, P1 (RPLP1) pseudogene | 2.6049 | 0.0000 | |
| 6 | ENSG00000214182 | PTMAP5 | prothymosin alpha pseudogene 5 | 2.4117 | 0.0000 |
| 7 | ENSG00000228519 | RAN binding protein 1 pseudogene | 2.3456 | 0.0000 | |
| 8 | ENSG00000214628 | NDUFB5P2 | NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 | 2.3219 | 0.0000 |
| 9 | ENSG00000223733 | RPL18AP14 | ribosomal protein L18a pseudogene 14 | 2.3219 | 0.0003 |
| 10 | ENSG00000235777 | DPYD-AS2 | DPYD antisense RNA 2 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000213513 | IMPDH1P5 | inosine monophosphate dehydrogenase 1 pseudogene 5 | -2.2698 | 0.0000 |
| 63340 | ENSG00000176842 | IRX5 | iroquois homeobox 5 | -2.2694 | 0.0000 |
| 63339 | ENSG00000272031 | ANKRD34A | ankyrin repeat domain 34A | -2.2691 | 0.0000 |
| 63338 | ENSG00000102981 | PARD6A | par-6 family cell polarity regulator alpha | -2.2690 | 0.0000 |
| 63337 | ENSG00000260889 | CKBP1 | creatine kinase B pseudogene 1 | -2.2689 | 0.0000 |
| 63336 | ENSG00000260579 | novel transcript, antisense to TM6SF1 | -2.2687 | 0.0000 | |
| 63335 | ENSG00000254294 | IMPDH1P6 | inosine monophosphate dehydrogenase 1 pseudogene 6 | -2.2686 | 0.0000 |
| 63334 | ENSG00000140044 | JDP2 | Jun dimerization protein 2 | -2.2685 | 0.0000 |
| 63333 | ENSG00000255091 | novel transcript | -2.2685 | 0.0000 | |
| 63332 | ENSG00000231983 | LINC00415 | long intergenic non-protein coding RNA 415 | -2.2684 | 0.0000 |
