Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773740

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773740 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M367	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000253108		novel transcript	3.3219	0.0000
2	ENSG00000283463	HSFX4	heat shock transcription factor family, X-linked member 4	3.1699	0.0000
3	ENSG00000254482		chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene	3.0000	0.0000
4	ENSG00000252959	RNA5SP170	RNA, 5S ribosomal pseudogene 170	2.7438	0.0000
5	ENSG00000218175		ribosomal protein, large, P1 (RPLP1) pseudogene	2.6049	0.0000
6	ENSG00000214182	PTMAP5	prothymosin alpha pseudogene 5	2.4117	0.0000
7	ENSG00000228519	RANBP1P1	RANBP1 pseudogene 1	2.3456	0.0000
8	ENSG00000214628	NDUFB5P2	NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2	2.3219	0.0000
9	ENSG00000223733	RPL18AP14	ribosomal protein L18a pseudogene 14	2.3219	0.0003
10	ENSG00000235777	DPYD-AS2	DPYD antisense RNA 2	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000213763	ACTBP2	ACTB pseudogene 2	-2.2008	0.0000
63127	ENSG00000182107	TMEM30B	transmembrane protein 30B	-2.2004	0.0000
63126	ENSG00000272969		novel transcript, antisense to clock	-2.2002	0.0000
63125	ENSG00000234811		pseudogene similar to part of RAB18 (RAB18, member RAS oncogene family)	-2.2001	0.0000
63124	ENSG00000200419		Y RNA	-2.1998	0.0000
63123	ENSG00000206625	RNU6-1	RNA, U6 small nuclear 1	-2.1998	0.0000
63122	ENSG00000176018	LYSMD3	LysM domain containing 3	-2.1996	0.0000
63121	ENSG00000100426	ZBED4	zinc finger BED-type containing 4	-2.1996	0.0000
63120	ENSG00000233045	RPL15P5	ribosomal protein L15 pseudogene 5	-2.1995	0.0000
63119	ENSG00000225643		novel transcript	-2.1995	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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