Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773740
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773740
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M367
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000253108
novel transcript
3.3219
0.0000
2
ENSG00000283463
HSFX4
heat shock transcription factor family, X-linked member 4
3.1699
0.0000
3
ENSG00000254482
chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene
3.0000
0.0000
4
ENSG00000252959
RNA5SP170
RNA, 5S ribosomal pseudogene 170
2.7438
0.0000
5
ENSG00000218175
ribosomal protein, large, P1 (RPLP1) pseudogene
2.6049
0.0000
6
ENSG00000214182
PTMAP5
prothymosin alpha pseudogene 5
2.4117
0.0000
7
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
2.3456
0.0000
8
ENSG00000214628
NDUFB5P2
NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2
2.3219
0.0000
9
ENSG00000223733
RPL18AP14
ribosomal protein L18a pseudogene 14
2.3219
0.0003
10
ENSG00000235777
DPYD-AS2
DPYD antisense RNA 2
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000213763
ACTBP2
ACTB pseudogene 2
-2.2008
0.0000
63127
ENSG00000182107
TMEM30B
transmembrane protein 30B
-2.2004
0.0000
63126
ENSG00000272969
novel transcript, antisense to clock
-2.2002
0.0000
63125
ENSG00000234811
pseudogene similar to part of RAB18 (RAB18, member RAS oncogene family)
-2.2001
0.0000
63124
ENSG00000200419
Y RNA
-2.1998
0.0000
63123
ENSG00000206625
RNU6-1
RNA, U6 small nuclear 1
-2.1998
0.0000
63122
ENSG00000176018
LYSMD3
LysM domain containing 3
-2.1996
0.0000
63121
ENSG00000100426
ZBED4
zinc finger BED-type containing 4
-2.1996
0.0000
63120
ENSG00000233045
RPL15P5
ribosomal protein L15 pseudogene 5
-2.1995
0.0000
63119
ENSG00000225643
novel transcript
-2.1995
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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