Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773740

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773740


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M367Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253108 novel transcript 3.3219 0.0000
2 ENSG00000283463 HSFX4 heat shock transcription factor family, X-linked member 4 3.1699 0.0000
3 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 3.0000 0.0000
4 ENSG00000252959 RNA5SP170 RNA, 5S ribosomal pseudogene 170 2.7438 0.0000
5 ENSG00000218175 ribosomal protein, large, P1 (RPLP1) pseudogene 2.6049 0.0000
6 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 2.4117 0.0000
7 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.3456 0.0000
8 ENSG00000214628 NDUFB5P2 NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 2.3219 0.0000
9 ENSG00000223733 RPL18AP14 ribosomal protein L18a pseudogene 14 2.3219 0.0003
10 ENSG00000235777 DPYD-AS2 DPYD antisense RNA 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000213763 ACTBP2 ACTB pseudogene 2 -2.2008 0.0000
63127 ENSG00000182107 TMEM30B transmembrane protein 30B -2.2004 0.0000
63126 ENSG00000272969 novel transcript, antisense to clock -2.2002 0.0000
63125 ENSG00000234811 pseudogene similar to part of RAB18 (RAB18, member RAS oncogene family) -2.2001 0.0000
63124 ENSG00000200419 Y RNA -2.1998 0.0000
63123 ENSG00000206625 RNU6-1 RNA, U6 small nuclear 1 -2.1998 0.0000
63122 ENSG00000176018 LYSMD3 LysM domain containing 3 -2.1996 0.0000
63121 ENSG00000100426 ZBED4 zinc finger BED-type containing 4 -2.1996 0.0000
63120 ENSG00000233045 RPL15P5 ribosomal protein L15 pseudogene 5 -2.1995 0.0000
63119 ENSG00000225643 novel transcript -2.1995 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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