SHOGoiN Cell Methylome: GSM2773740

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773740


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M367Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253108 novel transcript 3.3219 0.0000
2 ENSG00000283463 HSFX4 heat shock transcription factor family, X-linked member 4 3.1699 0.0000
3 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 3.0000 0.0000
4 ENSG00000252959 RNA5SP170 RNA, 5S ribosomal pseudogene 170 2.7438 0.0000
5 ENSG00000218175 ribosomal protein, large, P1 (RPLP1) pseudogene 2.6049 0.0000
6 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 2.4117 0.0000
7 ENSG00000228519 RAN binding protein 1 pseudogene 2.3456 0.0000
8 ENSG00000214628 NDUFB5P2 NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 2.3219 0.0000
9 ENSG00000223733 RPL18AP14 ribosomal protein L18a pseudogene 14 2.3219 0.0003
10 ENSG00000235777 DPYD-AS2 DPYD antisense RNA 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000213513 IMPDH1P5 inosine monophosphate dehydrogenase 1 pseudogene 5 -2.2698 0.0000
63340 ENSG00000176842 IRX5 iroquois homeobox 5 -2.2694 0.0000
63339 ENSG00000272031 ANKRD34A ankyrin repeat domain 34A -2.2691 0.0000
63338 ENSG00000102981 PARD6A par-6 family cell polarity regulator alpha -2.2690 0.0000
63337 ENSG00000260889 CKBP1 creatine kinase B pseudogene 1 -2.2689 0.0000
63336 ENSG00000260579 novel transcript, antisense to TM6SF1 -2.2687 0.0000
63335 ENSG00000254294 IMPDH1P6 inosine monophosphate dehydrogenase 1 pseudogene 6 -2.2686 0.0000
63334 ENSG00000140044 JDP2 Jun dimerization protein 2 -2.2685 0.0000
63333 ENSG00000255091 novel transcript -2.2685 0.0000
63332 ENSG00000231983 LINC00415 long intergenic non-protein coding RNA 415 -2.2684 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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