Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773741

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773741


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M368Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000131721 RHOXF2 Rhox homeobox family member 2 2.5850 0.0000
2 ENSG00000257528 KRT8P19 keratin 8 pseudogene 19 2.3219 0.0000
3 ENSG00000280837 CPS1-IT1 CPS1 intronic transcript 1 2.3219 0.0000
4 ENSG00000198277 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 2.2340 0.0000
5 ENSG00000201959 Y RNA 2.0000 0.0000
6 ENSG00000233448 PMS2P9 PMS1 homolog 2, mismatch repair system component pseudogene 9 2.0000 0.0000
7 ENSG00000236468 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene 2.0000 0.0000
8 ENSG00000240241 novel transcript 2.0000 0.0021
9 ENSG00000258225 novel transcript, antisense to NAV3 2.0000 0.0021
10 ENSG00000259628 novel transcript 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000272104 novel protein -2.0796 0.0000
63127 ENSG00000146070 PLA2G7 phospholipase A2 group VII -2.0796 0.0000
63126 ENSG00000106038 EVX1 even-skipped homeobox 1 -2.0792 0.0000
63125 ENSG00000280273 novel transcript, antisense to MTMR9 -2.0790 0.0000
63124 ENSG00000235086 FNDC1-IT1 FNDC1 intronic transcript 1 -2.0787 0.0000
63123 ENSG00000273175 novel transcript -2.0785 0.0000
63122 ENSG00000226870 chromosome X open reading frame 49 (CXorf49) pseudogene -2.0783 0.0000
63121 ENSG00000283078 novel transcript -2.0782 0.0000
63120 ENSG00000269275 novel transcript, antisense to TMEM190 -2.0780 0.0000
63119 ENSG00000273472 novel transcript -2.0778 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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