Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773741
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773741
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M368
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000131721
RHOXF2
Rhox homeobox family member 2
2.5850
0.0000
2
ENSG00000257528
KRT8P19
keratin 8 pseudogene 19
2.3219
0.0000
3
ENSG00000280837
CPS1-IT1
CPS1 intronic transcript 1
2.3219
0.0000
4
ENSG00000198277
pseudogene similar to part of UDP glucuronosyltransferase 2 family protein
2.2340
0.0000
5
ENSG00000201959
Y RNA
2.0000
0.0000
6
ENSG00000233448
PMS2P9
PMS1 homolog 2, mismatch repair system component pseudogene 9
2.0000
0.0000
7
ENSG00000236468
eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene
2.0000
0.0000
8
ENSG00000240241
novel transcript
2.0000
0.0021
9
ENSG00000258225
novel transcript, antisense to NAV3
2.0000
0.0021
10
ENSG00000259628
novel transcript
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000272104
novel protein
-2.0796
0.0000
63127
ENSG00000146070
PLA2G7
phospholipase A2 group VII
-2.0796
0.0000
63126
ENSG00000106038
EVX1
even-skipped homeobox 1
-2.0792
0.0000
63125
ENSG00000280273
novel transcript, antisense to MTMR9
-2.0790
0.0000
63124
ENSG00000235086
FNDC1-IT1
FNDC1 intronic transcript 1
-2.0787
0.0000
63123
ENSG00000273175
novel transcript
-2.0785
0.0000
63122
ENSG00000226870
chromosome X open reading frame 49 (CXorf49) pseudogene
-2.0783
0.0000
63121
ENSG00000283078
novel transcript
-2.0782
0.0000
63120
ENSG00000269275
novel transcript, antisense to TMEM190
-2.0780
0.0000
63119
ENSG00000273472
novel transcript
-2.0778
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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