Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773741

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773741 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M368	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000131721	RHOXF2	Rhox homeobox family member 2	2.5850	0.0000
2	ENSG00000257528	KRT8P19	keratin 8 pseudogene 19	2.3219	0.0000
3	ENSG00000280837	CPS1-IT1	CPS1 intronic transcript 1	2.3219	0.0000
4	ENSG00000198277		pseudogene similar to part of UDP glucuronosyltransferase 2 family protein	2.2340	0.0000
5	ENSG00000201959		Y RNA	2.0000	0.0000
6	ENSG00000233448	PMS2P9	PMS1 homolog 2, mismatch repair system component pseudogene 9	2.0000	0.0000
7	ENSG00000236468		eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene	2.0000	0.0000
8	ENSG00000240241		novel transcript	2.0000	0.0021
9	ENSG00000258225		novel transcript, antisense to NAV3	2.0000	0.0021
10	ENSG00000259628		novel transcript	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000272104		novel protein	-2.0796	0.0000
63127	ENSG00000146070	PLA2G7	phospholipase A2 group VII	-2.0796	0.0000
63126	ENSG00000106038	EVX1	even-skipped homeobox 1	-2.0792	0.0000
63125	ENSG00000280273		novel transcript, antisense to MTMR9	-2.0790	0.0000
63124	ENSG00000235086	FNDC1-IT1	FNDC1 intronic transcript 1	-2.0787	0.0000
63123	ENSG00000273175		novel transcript	-2.0785	0.0000
63122	ENSG00000226870		chromosome X open reading frame 49 (CXorf49) pseudogene	-2.0783	0.0000
63121	ENSG00000283078		novel transcript	-2.0782	0.0000
63120	ENSG00000269275		novel transcript, antisense to TMEM190	-2.0780	0.0000
63119	ENSG00000273472		novel transcript	-2.0778	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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