SHOGoiN Cell Methylome: GSM2773741

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773741


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M368Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000131721 RHOXF2 Rhox homeobox family member 2 2.5850 0.0000
2 ENSG00000257528 KRT8P19 keratin 8 pseudogene 19 2.3219 0.0000
3 ENSG00000280837 CPS1-IT1 CPS1 intronic transcript 1 2.3219 0.0000
4 ENSG00000198277 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 2.2340 0.0000
5 ENSG00000201959 NA 2.0000 0.0000
6 ENSG00000233448 PMS2P9 PMS1 homolog 2, mismatch repair system component pseudogene 9 2.0000 0.0000
7 ENSG00000236468 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene 2.0000 0.0000
8 ENSG00000240241 novel transcript 2.0000 0.0021
9 ENSG00000258225 novel transcript, antisense to NAV3 2.0000 0.0021
10 ENSG00000259628 novel transcript 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000259592 PRELID1P4 PRELI domain containing 1 pseudogene 4 -2.1473 0.0000
63340 ENSG00000171189 GRIK1 glutamate ionotropic receptor kainate type subunit 1 -2.1472 0.0000
63339 ENSG00000218358 RAET1K retinoic acid early transcript 1K pseudogene -2.1471 0.0000
63338 ENSG00000128276 RFPL3 ret finger protein like 3 -2.1463 0.0000
63337 ENSG00000230617 pseudogene similar to part of proteasome (prosome, macropain) subunit, beta type, 5 PSMB5 -2.1462 0.1542
63336 ENSG00000207942 MIR136 microRNA 136 -2.1461 0.0000
63335 ENSG00000279875 TEC -2.1460 0.0000
63334 ENSG00000251891 RNU7-79P RNA, U7 small nuclear 79 pseudogene -2.1459 0.0000
63333 ENSG00000264464 novel transcript -2.1459 0.0000
63332 ENSG00000254006 novel transcript -2.1457 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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