SHOGoiN Cell Methylome: GSM2773741
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773741 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M368 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000131721 | RHOXF2 | Rhox homeobox family member 2 | 2.5850 | 0.0000 |
| 2 | ENSG00000257528 | KRT8P19 | keratin 8 pseudogene 19 | 2.3219 | 0.0000 |
| 3 | ENSG00000280837 | CPS1-IT1 | CPS1 intronic transcript 1 | 2.3219 | 0.0000 |
| 4 | ENSG00000198277 | pseudogene similar to part of UDP glucuronosyltransferase 2 family protein | 2.2340 | 0.0000 | |
| 5 | ENSG00000201959 | NA | 2.0000 | 0.0000 | |
| 6 | ENSG00000233448 | PMS2P9 | PMS1 homolog 2, mismatch repair system component pseudogene 9 | 2.0000 | 0.0000 |
| 7 | ENSG00000236468 | eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene | 2.0000 | 0.0000 | |
| 8 | ENSG00000240241 | novel transcript | 2.0000 | 0.0021 | |
| 9 | ENSG00000258225 | novel transcript, antisense to NAV3 | 2.0000 | 0.0021 | |
| 10 | ENSG00000259628 | novel transcript | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000259592 | PRELID1P4 | PRELI domain containing 1 pseudogene 4 | -2.1473 | 0.0000 |
| 63340 | ENSG00000171189 | GRIK1 | glutamate ionotropic receptor kainate type subunit 1 | -2.1472 | 0.0000 |
| 63339 | ENSG00000218358 | RAET1K | retinoic acid early transcript 1K pseudogene | -2.1471 | 0.0000 |
| 63338 | ENSG00000128276 | RFPL3 | ret finger protein like 3 | -2.1463 | 0.0000 |
| 63337 | ENSG00000230617 | pseudogene similar to part of proteasome (prosome, macropain) subunit, beta type, 5 PSMB5 | -2.1462 | 0.1542 | |
| 63336 | ENSG00000207942 | MIR136 | microRNA 136 | -2.1461 | 0.0000 |
| 63335 | ENSG00000279875 | TEC | -2.1460 | 0.0000 | |
| 63334 | ENSG00000251891 | RNU7-79P | RNA, U7 small nuclear 79 pseudogene | -2.1459 | 0.0000 |
| 63333 | ENSG00000264464 | novel transcript | -2.1459 | 0.0000 | |
| 63332 | ENSG00000254006 | novel transcript | -2.1457 | 0.0000 |
