Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773742
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773742
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M369
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000230617
pseudogene similar to part of proteasome (prosome, macropain) subunit, beta type, 5 PSMB5
3.1699
0.0000
2
ENSG00000248874
C5orf17
chromosome 5 putative open reading frame 17
3.1699
0.0000
3
ENSG00000266479
heat shock 70kDa protein 9 (mortalin) (HSPA9) pseudogene
3.0000
0.0000
4
ENSG00000230418
ARL2BPP7
ADP ribosylation factor like GTPase 2 binding protein pseudogene 7
2.8074
0.0000
5
ENSG00000276841
SYF2 pre-mRNA-splicing factor (SYF2) pseudogene
2.8074
0.0000
6
ENSG00000207255
RNU6-1117P
RNA, U6 small nuclear 1117, pseudogene
2.3219
0.0000
7
ENSG00000218757
60S ribosomal protein L17 (RPL17) pseudogene
2.3219
0.0000
8
ENSG00000229013
GTPase activating protein (SH3 domain) binding protein 1 (G3BP1) pseudogene
2.3219
0.0000
9
ENSG00000238842
RNU7-106P
RNA, U7 small nuclear 106 pseudogene
2.3219
0.0002
10
ENSG00000253584
novel transcript
2.3219
0.0002
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000134259
NGF
nerve growth factor
-2.4666
0.0000
63127
ENSG00000278126
novel transcript
-2.4664
0.0000
63126
ENSG00000185883
ATP6V0C
ATPase H+ transporting V0 subunit c
-2.4657
0.0000
63125
ENSG00000162704
ARPC5
actin related protein 2/3 complex subunit 5
-2.4657
0.0000
63124
ENSG00000258378
novel transcript, antisense to TIMM9
-2.4652
0.0000
63123
ENSG00000227646
STEAP2-AS1
STEAP2 antisense RNA 1
-2.4650
0.0000
63122
ENSG00000231636
AGBL5-AS1
AGBL5 antisense RNA 1
-2.4649
0.0000
63121
ENSG00000278266
novel transcript
-2.4647
0.0000
63120
ENSG00000234264
DEPDC1-AS1
DEPDC1 antisense RNA 1
-2.4645
0.0000
63119
ENSG00000205791
LOH12CR2
loss of heterozygosity on chromosome 12, region 2
-2.4642
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...