Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773742

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773742


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M369Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230617 pseudogene similar to part of proteasome (prosome, macropain) subunit, beta type, 5 PSMB5 3.1699 0.0000
2 ENSG00000248874 C5orf17 chromosome 5 putative open reading frame 17 3.1699 0.0000
3 ENSG00000266479 heat shock 70kDa protein 9 (mortalin) (HSPA9) pseudogene 3.0000 0.0000
4 ENSG00000230418 ARL2BPP7 ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 2.8074 0.0000
5 ENSG00000276841 SYF2 pre-mRNA-splicing factor (SYF2) pseudogene 2.8074 0.0000
6 ENSG00000207255 RNU6-1117P RNA, U6 small nuclear 1117, pseudogene 2.3219 0.0000
7 ENSG00000218757 60S ribosomal protein L17 (RPL17) pseudogene 2.3219 0.0000
8 ENSG00000229013 GTPase activating protein (SH3 domain) binding protein 1 (G3BP1) pseudogene 2.3219 0.0000
9 ENSG00000238842 RNU7-106P RNA, U7 small nuclear 106 pseudogene 2.3219 0.0002
10 ENSG00000253584 novel transcript 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000134259 NGF nerve growth factor -2.4666 0.0000
63127 ENSG00000278126 novel transcript -2.4664 0.0000
63126 ENSG00000185883 ATP6V0C ATPase H+ transporting V0 subunit c -2.4657 0.0000
63125 ENSG00000162704 ARPC5 actin related protein 2/3 complex subunit 5 -2.4657 0.0000
63124 ENSG00000258378 novel transcript, antisense to TIMM9 -2.4652 0.0000
63123 ENSG00000227646 STEAP2-AS1 STEAP2 antisense RNA 1 -2.4650 0.0000
63122 ENSG00000231636 AGBL5-AS1 AGBL5 antisense RNA 1 -2.4649 0.0000
63121 ENSG00000278266 novel transcript -2.4647 0.0000
63120 ENSG00000234264 DEPDC1-AS1 DEPDC1 antisense RNA 1 -2.4645 0.0000
63119 ENSG00000205791 LOH12CR2 loss of heterozygosity on chromosome 12, region 2 -2.4642 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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