SHOGoiN Cell Methylome: GSM2773742

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773742


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M369Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230617 pseudogene similar to part of proteasome (prosome, macropain) subunit, beta type, 5 PSMB5 3.1699 0.0000
2 ENSG00000248874 C5orf17 chromosome 5 open reading frame 17 (putative) 3.1699 0.0000
3 ENSG00000266479 heat shock 70kDa protein 9 (mortalin) (HSPA9) pseudogene 3.0000 0.0000
4 ENSG00000230418 ARL2BPP7 ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 2.8074 0.0000
5 ENSG00000276841 SYF2 pre-mRNA-splicing factor (SYF2) pseudogene 2.8074 0.0000
6 ENSG00000207255 RNU6-1117P RNA, U6 small nuclear 1117, pseudogene 2.3219 0.0000
7 ENSG00000218757 60S ribosomal protein L17 (RPL17) pseudogene 2.3219 0.0000
8 ENSG00000229013 GTPase activating protein (SH3 domain) binding protein 1 (G3BP1) pseudogene 2.3219 0.0000
9 ENSG00000238842 RNU7-106P RNA, U7 small nuclear 106 pseudogene 2.3219 0.0002
10 ENSG00000253584 novel transcript 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000224531 SMIM13 small integral membrane protein 13 -2.5427 0.0000
63340 ENSG00000122691 TWIST1 twist family bHLH transcription factor 1 -2.5420 0.0000
63339 ENSG00000272772 novel protein -2.5410 0.0000
63338 ENSG00000258446 COX assembly mitochondrial protein homolog (S. cerevisiae) (CMC1) pseudogene -2.5410 0.0000
63337 ENSG00000127334 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 -2.5410 0.0000
63336 ENSG00000198680 TUSC1 tumor suppressor candidate 1 -2.5404 0.0000
63335 ENSG00000225210 DUXAP9 double homeobox A pseudogene 9 -2.5396 0.0000
63334 ENSG00000116095 PLEKHA3 pleckstrin homology domain containing A3 -2.5396 0.0000
63333 ENSG00000278058 novel transcript -2.5393 0.0000
63332 ENSG00000226395 MRPS21P5 mitochondrial ribosomal protein S21 pseudogene 5 -2.5389 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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