SHOGoiN Cell Methylome: GSM2773742
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773742 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M369 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000230617 | pseudogene similar to part of proteasome (prosome, macropain) subunit, beta type, 5 PSMB5 | 3.1699 | 0.0000 | |
| 2 | ENSG00000248874 | C5orf17 | chromosome 5 open reading frame 17 (putative) | 3.1699 | 0.0000 |
| 3 | ENSG00000266479 | heat shock 70kDa protein 9 (mortalin) (HSPA9) pseudogene | 3.0000 | 0.0000 | |
| 4 | ENSG00000230418 | ARL2BPP7 | ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 | 2.8074 | 0.0000 |
| 5 | ENSG00000276841 | SYF2 pre-mRNA-splicing factor (SYF2) pseudogene | 2.8074 | 0.0000 | |
| 6 | ENSG00000207255 | RNU6-1117P | RNA, U6 small nuclear 1117, pseudogene | 2.3219 | 0.0000 |
| 7 | ENSG00000218757 | 60S ribosomal protein L17 (RPL17) pseudogene | 2.3219 | 0.0000 | |
| 8 | ENSG00000229013 | GTPase activating protein (SH3 domain) binding protein 1 (G3BP1) pseudogene | 2.3219 | 0.0000 | |
| 9 | ENSG00000238842 | RNU7-106P | RNA, U7 small nuclear 106 pseudogene | 2.3219 | 0.0002 |
| 10 | ENSG00000253584 | novel transcript | 2.3219 | 0.0002 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000224531 | SMIM13 | small integral membrane protein 13 | -2.5427 | 0.0000 |
| 63340 | ENSG00000122691 | TWIST1 | twist family bHLH transcription factor 1 | -2.5420 | 0.0000 |
| 63339 | ENSG00000272772 | novel protein | -2.5410 | 0.0000 | |
| 63338 | ENSG00000258446 | COX assembly mitochondrial protein homolog (S. cerevisiae) (CMC1) pseudogene | -2.5410 | 0.0000 | |
| 63337 | ENSG00000127334 | DYRK2 | dual specificity tyrosine phosphorylation regulated kinase 2 | -2.5410 | 0.0000 |
| 63336 | ENSG00000198680 | TUSC1 | tumor suppressor candidate 1 | -2.5404 | 0.0000 |
| 63335 | ENSG00000225210 | DUXAP9 | double homeobox A pseudogene 9 | -2.5396 | 0.0000 |
| 63334 | ENSG00000116095 | PLEKHA3 | pleckstrin homology domain containing A3 | -2.5396 | 0.0000 |
| 63333 | ENSG00000278058 | novel transcript | -2.5393 | 0.0000 | |
| 63332 | ENSG00000226395 | MRPS21P5 | mitochondrial ribosomal protein S21 pseudogene 5 | -2.5389 | 0.0000 |
