Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773742

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773742 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M369	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000230617		pseudogene similar to part of proteasome (prosome, macropain) subunit, beta type, 5 PSMB5	3.1699	0.0000
2	ENSG00000248874	C5orf17	chromosome 5 putative open reading frame 17	3.1699	0.0000
3	ENSG00000266479		heat shock 70kDa protein 9 (mortalin) (HSPA9) pseudogene	3.0000	0.0000
4	ENSG00000230418	ARL2BPP7	ADP ribosylation factor like GTPase 2 binding protein pseudogene 7	2.8074	0.0000
5	ENSG00000276841		SYF2 pre-mRNA-splicing factor (SYF2) pseudogene	2.8074	0.0000
6	ENSG00000207255	RNU6-1117P	RNA, U6 small nuclear 1117, pseudogene	2.3219	0.0000
7	ENSG00000218757		60S ribosomal protein L17 (RPL17) pseudogene	2.3219	0.0000
8	ENSG00000229013		GTPase activating protein (SH3 domain) binding protein 1 (G3BP1) pseudogene	2.3219	0.0000
9	ENSG00000238842	RNU7-106P	RNA, U7 small nuclear 106 pseudogene	2.3219	0.0002
10	ENSG00000253584		novel transcript	2.3219	0.0002

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000134259	NGF	nerve growth factor	-2.4666	0.0000
63127	ENSG00000278126		novel transcript	-2.4664	0.0000
63126	ENSG00000185883	ATP6V0C	ATPase H+ transporting V0 subunit c	-2.4657	0.0000
63125	ENSG00000162704	ARPC5	actin related protein 2/3 complex subunit 5	-2.4657	0.0000
63124	ENSG00000258378		novel transcript, antisense to TIMM9	-2.4652	0.0000
63123	ENSG00000227646	STEAP2-AS1	STEAP2 antisense RNA 1	-2.4650	0.0000
63122	ENSG00000231636	AGBL5-AS1	AGBL5 antisense RNA 1	-2.4649	0.0000
63121	ENSG00000278266		novel transcript	-2.4647	0.0000
63120	ENSG00000234264	DEPDC1-AS1	DEPDC1 antisense RNA 1	-2.4645	0.0000
63119	ENSG00000205791	LOH12CR2	loss of heterozygosity on chromosome 12, region 2	-2.4642	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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