SHOGoiN Cell Methylome: GSM2773743
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773743 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M370 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000213252 | pyridine nucleotide-disulphide oxidoreductase domain 1 (PYROXD1) pseudogene | 2.5850 | 0.0000 | |
| 2 | ENSG00000214415 | GNAT3 | G protein subunit alpha transducin 3 | 2.5850 | 0.0000 |
| 3 | ENSG00000221710 | MIR1298 | microRNA 1298 | 2.4973 | 0.0000 |
| 4 | ENSG00000260126 | novel transcript | 2.3219 | 0.0000 | |
| 5 | ENSG00000251586 | TET2-AS1 | TET2 antisense RNA 1 | 2.1230 | 0.0000 |
| 6 | ENSG00000207515 | RNU6-555P | RNA, U6 small nuclear 555, pseudogene | 2.0000 | 0.0018 |
| 7 | ENSG00000225486 | acid phosphatase 1, soluble (ACP1) pseudogene | 2.0000 | 0.0018 | |
| 8 | ENSG00000232576 | ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene | 2.0000 | 0.0000 | |
| 10 | ENSG00000250219 | LTV1P1 | LTV1 ribosome biogenesis factor pseudogene 1 | 2.0000 | 0.0018 |
| 63332 | ENSG00000172380 | GNG12 | G protein subunit gamma 12 | -2.2821 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000237223 | SULT1C2P1 | sulfotransferase family 1C member 2 pseudogene 1 | -2.2840 | 0.0000 |
| 63340 | ENSG00000181408 | UTS2R | urotensin 2 receptor | -2.2837 | 0.0000 |
| 63339 | ENSG00000261350 | novel transcript | -2.2835 | 0.0000 | |
| 63338 | ENSG00000090061 | CCNK | cyclin K | -2.2833 | 0.0000 |
| 63337 | ENSG00000232760 | novel pseudogene | -2.2832 | 0.0000 | |
| 63336 | ENSG00000274698 | novel transcript | -2.2832 | 0.0000 | |
| 63335 | ENSG00000174521 | TTC9B | tetratricopeptide repeat domain 9B | -2.2829 | 0.0000 |
| 63334 | ENSG00000080224 | EPHA6 | EPH receptor A6 | -2.2822 | 0.0000 |
| 63333 | ENSG00000266325 | MIR3665 | microRNA 3665 | -2.2822 | 0.0000 |
| 63332 | ENSG00000172380 | GNG12 | G protein subunit gamma 12 | -2.2821 | 0.0000 |
