SHOGoiN Cell Methylome: GSM2773743

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773743


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M370Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213252 pyridine nucleotide-disulphide oxidoreductase domain 1 (PYROXD1) pseudogene 2.5850 0.0000
2 ENSG00000214415 GNAT3 G protein subunit alpha transducin 3 2.5850 0.0000
3 ENSG00000221710 MIR1298 microRNA 1298 2.4973 0.0000
4 ENSG00000260126 novel transcript 2.3219 0.0000
5 ENSG00000251586 TET2-AS1 TET2 antisense RNA 1 2.1230 0.0000
6 ENSG00000207515 RNU6-555P RNA, U6 small nuclear 555, pseudogene 2.0000 0.0018
7 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 2.0000 0.0018
8 ENSG00000232576 ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene 2.0000 0.0000
10 ENSG00000250219 LTV1P1 LTV1 ribosome biogenesis factor pseudogene 1 2.0000 0.0018
63332 ENSG00000172380 GNG12 G protein subunit gamma 12 -2.2821 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000237223 SULT1C2P1 sulfotransferase family 1C member 2 pseudogene 1 -2.2840 0.0000
63340 ENSG00000181408 UTS2R urotensin 2 receptor -2.2837 0.0000
63339 ENSG00000261350 novel transcript -2.2835 0.0000
63338 ENSG00000090061 CCNK cyclin K -2.2833 0.0000
63337 ENSG00000232760 novel pseudogene -2.2832 0.0000
63336 ENSG00000274698 novel transcript -2.2832 0.0000
63335 ENSG00000174521 TTC9B tetratricopeptide repeat domain 9B -2.2829 0.0000
63334 ENSG00000080224 EPHA6 EPH receptor A6 -2.2822 0.0000
63333 ENSG00000266325 MIR3665 microRNA 3665 -2.2822 0.0000
63332 ENSG00000172380 GNG12 G protein subunit gamma 12 -2.2821 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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