Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773743
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773743
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M370
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000213252
pyridine nucleotide-disulphide oxidoreductase domain 1 (PYROXD1) pseudogene
2.5850
0.0000
2
ENSG00000214415
GNAT3
G protein subunit alpha transducin 3
2.5850
0.0000
3
ENSG00000221710
MIR1298
microRNA 1298
2.4973
0.0000
4
ENSG00000260126
novel transcript
2.3219
0.0000
5
ENSG00000251586
TET2-AS1
TET2 antisense RNA 1
2.1230
0.0000
6
ENSG00000207515
RNU6-555P
RNA, U6 small nuclear 555, pseudogene
2.0000
0.0018
7
ENSG00000225486
acid phosphatase 1, soluble (ACP1) pseudogene
2.0000
0.0018
8
ENSG00000232576
ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene
2.0000
0.0000
10
ENSG00000250219
LTV1P1
LTV1 ribosome biogenesis factor pseudogene 1
2.0000
0.0018
63119
ENSG00000152518
ZFP36L2
ZFP36 ring finger protein like 2
-2.2181
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000226252
novel transcript
-2.2224
0.0000
63127
ENSG00000234695
TFPI2-DT
TFPI2 divergent transcript
-2.2216
0.0019
63126
ENSG00000233483
EFCAB15P
EF-hand calcium binding domain 15, pseudogene
-2.2214
0.0000
63125
ENSG00000168283
BMI1
BMI1 proto-oncogene, polycomb ring finger
-2.2211
0.0000
63124
ENSG00000283301
MIR4520-2
microRNA 4520-2
-2.2204
0.0000
63123
ENSG00000167434
CA4
carbonic anhydrase 4
-2.2200
0.0000
63122
ENSG00000273855
novel transcript, sense intronic to PLCB2
-2.2194
0.0000
63121
ENSG00000245719
novel transcript
-2.2191
0.0000
63120
ENSG00000243927
MRPS6
mitochondrial ribosomal protein S6
-2.2187
0.0000
63119
ENSG00000152518
ZFP36L2
ZFP36 ring finger protein like 2
-2.2181
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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