Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773743

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773743 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M370	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000213252		pyridine nucleotide-disulphide oxidoreductase domain 1 (PYROXD1) pseudogene	2.5850	0.0000
2	ENSG00000214415	GNAT3	G protein subunit alpha transducin 3	2.5850	0.0000
3	ENSG00000221710	MIR1298	microRNA 1298	2.4973	0.0000
4	ENSG00000260126		novel transcript	2.3219	0.0000
5	ENSG00000251586	TET2-AS1	TET2 antisense RNA 1	2.1230	0.0000
6	ENSG00000207515	RNU6-555P	RNA, U6 small nuclear 555, pseudogene	2.0000	0.0018
7	ENSG00000225486		acid phosphatase 1, soluble (ACP1) pseudogene	2.0000	0.0018
8	ENSG00000232576		ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene	2.0000	0.0000
10	ENSG00000250219	LTV1P1	LTV1 ribosome biogenesis factor pseudogene 1	2.0000	0.0018
63119	ENSG00000152518	ZFP36L2	ZFP36 ring finger protein like 2	-2.2181	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000226252		novel transcript	-2.2224	0.0000
63127	ENSG00000234695	TFPI2-DT	TFPI2 divergent transcript	-2.2216	0.0019
63126	ENSG00000233483	EFCAB15P	EF-hand calcium binding domain 15, pseudogene	-2.2214	0.0000
63125	ENSG00000168283	BMI1	BMI1 proto-oncogene, polycomb ring finger	-2.2211	0.0000
63124	ENSG00000283301	MIR4520-2	microRNA 4520-2	-2.2204	0.0000
63123	ENSG00000167434	CA4	carbonic anhydrase 4	-2.2200	0.0000
63122	ENSG00000273855		novel transcript, sense intronic to PLCB2	-2.2194	0.0000
63121	ENSG00000245719		novel transcript	-2.2191	0.0000
63120	ENSG00000243927	MRPS6	mitochondrial ribosomal protein S6	-2.2187	0.0000
63119	ENSG00000152518	ZFP36L2	ZFP36 ring finger protein like 2	-2.2181	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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