Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773743

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773743


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M370Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213252 pyridine nucleotide-disulphide oxidoreductase domain 1 (PYROXD1) pseudogene 2.5850 0.0000
2 ENSG00000214415 GNAT3 G protein subunit alpha transducin 3 2.5850 0.0000
3 ENSG00000221710 MIR1298 microRNA 1298 2.4973 0.0000
4 ENSG00000260126 novel transcript 2.3219 0.0000
5 ENSG00000251586 TET2-AS1 TET2 antisense RNA 1 2.1230 0.0000
6 ENSG00000207515 RNU6-555P RNA, U6 small nuclear 555, pseudogene 2.0000 0.0018
7 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 2.0000 0.0018
8 ENSG00000232576 ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene 2.0000 0.0000
10 ENSG00000250219 LTV1P1 LTV1 ribosome biogenesis factor pseudogene 1 2.0000 0.0018
63119 ENSG00000152518 ZFP36L2 ZFP36 ring finger protein like 2 -2.2181 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000226252 novel transcript -2.2224 0.0000
63127 ENSG00000234695 TFPI2-DT TFPI2 divergent transcript -2.2216 0.0019
63126 ENSG00000233483 EFCAB15P EF-hand calcium binding domain 15, pseudogene -2.2214 0.0000
63125 ENSG00000168283 BMI1 BMI1 proto-oncogene, polycomb ring finger -2.2211 0.0000
63124 ENSG00000283301 MIR4520-2 microRNA 4520-2 -2.2204 0.0000
63123 ENSG00000167434 CA4 carbonic anhydrase 4 -2.2200 0.0000
63122 ENSG00000273855 novel transcript, sense intronic to PLCB2 -2.2194 0.0000
63121 ENSG00000245719 novel transcript -2.2191 0.0000
63120 ENSG00000243927 MRPS6 mitochondrial ribosomal protein S6 -2.2187 0.0000
63119 ENSG00000152518 ZFP36L2 ZFP36 ring finger protein like 2 -2.2181 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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