SHOGoiN Cell Methylome: GSM2773744

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773744


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M371Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223786 novel transcript 2.3219 0.0003
2 ENSG00000257855 p53 and DNA-damage regulated 1 (PDRG1) pseudogene 2.3219 0.0003
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.2368 0.0000
4 ENSG00000227830 TRIM60P3Y tripartite motif containing 60 pseudogene 3, Y-linked 2.1610 0.0000
5 ENSG00000260747 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 (ATP5F1) pseudogene 2.1319 0.0000
6 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.0054 0.0000
7 ENSG00000199127 MIR383 microRNA 383 2.0000 0.0021
8 ENSG00000200622 RNU6-1059P RNA, U6 small nuclear 1059, pseudogene 2.0000 0.0021
9 ENSG00000206800 RNY3P7 RNY3 pseudogene 7 2.0000 0.0021
10 ENSG00000237213 RPL23AP22 ribosomal protein L23a pseudogene 22 2.0000 0.0021

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000228203 RNF144A-AS1 RNF144A antisense RNA 1 -2.2309 0.0000
63340 ENSG00000005513 SOX8 SRY-box 8 -2.2304 0.0000
63339 ENSG00000223393 novel transcript -2.2291 0.0000
63338 ENSG00000170549 IRX1 iroquois homeobox 1 -2.2291 0.0000
63337 ENSG00000264177 novel transcript -2.2287 0.0000
63336 ENSG00000272143 FGF14-AS2 FGF14 antisense RNA 2 -2.2284 0.0000
63335 ENSG00000219492 C2H2 zinc finger protein pseudogene -2.2281 0.0000
63334 ENSG00000165506 DNAAF2 dynein axonemal assembly factor 2 -2.2280 0.0000
63333 ENSG00000188566 NDOR1 NADPH dependent diflavin oxidoreductase 1 -2.2279 0.0000
63332 ENSG00000129473 BCL2L2 BCL2 like 2 -2.2278 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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