Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773744

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773744


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M371Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223786 novel transcript 2.3219 0.0003
2 ENSG00000257855 p53 and DNA-damage regulated 1 (PDRG1) pseudogene 2.3219 0.0003
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.2368 0.0000
4 ENSG00000227830 TRIM60P3Y tripartite motif containing 60 pseudogene 3, Y-linked 2.1610 0.0000
5 ENSG00000260747 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 (ATP5F1) pseudogene 2.1319 0.0000
6 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.0054 0.0000
7 ENSG00000199127 MIR383 microRNA 383 2.0000 0.0021
8 ENSG00000200622 RNU6-1059P RNA, U6 small nuclear 1059, pseudogene 2.0000 0.0021
9 ENSG00000206800 RNY3P7 RNY3 pseudogene 7 2.0000 0.0021
10 ENSG00000237213 RPL23AP22 ribosomal protein L23a pseudogene 22 2.0000 0.0021

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000272220 ADP-ribosylation factor-like 17B (ARL17B) pseudogene -2.1610 0.6058
63127 ENSG00000265218 novel transcript, antisense to LRRC37A3 -2.1610 0.6058
63126 ENSG00000249686 UDP glucuronosyltransferase 2 family pseudogene -2.1610 0.6058
63125 ENSG00000236153 novel transcript -2.1610 0.0990
63124 ENSG00000204776 IGKV1OR-3 immunoglobulin kappa variable 1/OR-3 (pseudogene) -2.1610 0.2405
63123 ENSG00000171126 KCNG3 potassium voltage-gated channel modifier subfamily G member 3 -2.1604 0.0000
63122 ENSG00000265962 GACAT2 gastric cancer associated transcript 2 -2.1601 0.0000
63121 ENSG00000221740 SNORD93 small nucleolar RNA, C/D box 93 -2.1601 0.0000
63120 ENSG00000187957 DNER delta/notch like EGF repeat containing -2.1597 0.0000
63119 ENSG00000120555 SEPTIN7P9 septin 7 pseudogene 9 -2.1596 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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