Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773745
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773745
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M372
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000253423
sulfite oxidase (SUOX) pseudogene
4.1699
0.0000
2
ENSG00000183395
PMCH
pro-melanin concentrating hormone
3.5850
0.0000
3
ENSG00000281344
HELLPAR
HELLP associated long non-coding RNA
3.5850
0.0000
4
ENSG00000274056
MIR6507
microRNA 6507
3.0000
0.0000
5
ENSG00000206650
SNORA70G
small nucleolar RNA, H/ACA box 70G
2.9308
0.0000
6
ENSG00000234040
RPL10P12
ribosomal protein L10 pseudogene 12
2.9308
0.0000
7
ENSG00000261326
LINC01355
long intergenic non-protein coding RNA 1355
2.8074
0.0000
8
ENSG00000250693
RPF2P2
ribosome production factor 2 homolog pseudogene 2
2.5850
0.0001
9
ENSG00000257721
membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (MPP7) pseudogene
2.5850
0.0001
10
ENSG00000223841
novel pseudogene (KIAA0733)
2.3219
0.0005
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000164976
MYORG
myogenesis regulating glycosidase (putative)
-2.2873
0.0000
63172
ENSG00000168032
ENTPD3
ectonucleoside triphosphate diphosphohydrolase 3
-2.2871
0.0000
63171
ENSG00000115232
ITGA4
integrin subunit alpha 4
-2.2868
0.0000
63170
ENSG00000218839
FAM138C
family with sequence similarity 138 member C
-2.2867
0.0000
63169
ENSG00000277342
novel transcript, sense intronic to BICD1
-2.2864
0.0000
63168
ENSG00000104332
SFRP1
secreted frizzled related protein 1
-2.2863
0.0000
63167
ENSG00000272617
novel protein, COG8-PDF readthrough
-2.2863
0.0000
63166
ENSG00000134326
CMPK2
cytidine/uridine monophosphate kinase 2
-2.2863
0.0000
63165
ENSG00000162723
SLAMF9
SLAM family member 9
-2.2860
0.0000
63164
ENSG00000280355
novel transcript
-2.2858
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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