SHOGoiN Cell Methylome: GSM2773745
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773745 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M372 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000253423 | sulfite oxidase (SUOX) pseudogene | 4.1699 | 0.0000 | |
| 2 | ENSG00000183395 | PMCH | pro-melanin concentrating hormone | 3.5850 | 0.0000 |
| 3 | ENSG00000281344 | HELLPAR | HELLP associated long non-coding RNA | 3.5850 | 0.0000 |
| 4 | ENSG00000274056 | MIR6507 | microRNA 6507 | 3.0000 | 0.0000 |
| 5 | ENSG00000206650 | SNORA70G | small nucleolar RNA, H/ACA box 70G | 2.9308 | 0.0000 |
| 6 | ENSG00000234040 | RPL10P12 | ribosomal protein L10 pseudogene 12 | 2.9308 | 0.0000 |
| 7 | ENSG00000261326 | LINC01355 | long intergenic non-protein coding RNA 1355 | 2.8074 | 0.0000 |
| 8 | ENSG00000250693 | RPF2P2 | ribosome production factor 2 homolog pseudogene 2 | 2.5850 | 0.0001 |
| 9 | ENSG00000257721 | membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (MPP7) pseudogene | 2.5850 | 0.0001 | |
| 10 | ENSG00000223841 | novel pseudogene (KIAA0733) | 2.3219 | 0.0005 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000224807 | DUX4L9 | double homeobox 4 like 9 (pseudogene) | -2.3382 | 0.0000 |
| 63340 | ENSG00000283474 | MIR6828 | microRNA 6828 | -2.3380 | 0.0000 |
| 63339 | ENSG00000222532 | MIR1468 | microRNA 1468 | -2.3361 | 0.0000 |
| 63338 | ENSG00000204311 | PJVK | pejvakin | -2.3360 | 0.0000 |
| 63337 | ENSG00000006015 | REX1BD | required for excision 1-B domain containing | -2.3360 | 0.0000 |
| 63336 | ENSG00000281383 | novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 | -2.3358 | 0.0000 | |
| 63335 | ENSG00000180592 | SKIDA1 | SKI/DACH domain containing 1 | -2.3357 | 0.0000 |
| 63334 | ENSG00000247381 | PLUT | PDX1 associated lncRNA, upregulator of transcription | -2.3355 | 0.0000 |
| 63333 | ENSG00000142748 | FCN3 | ficolin 3 | -2.3352 | 0.0000 |
| 63332 | ENSG00000270617 | URGCP-MRPS24 | URGCP-MRPS24 readthrough | -2.3352 | 0.0000 |
