Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773745

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773745


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M372Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253423 sulfite oxidase (SUOX) pseudogene 4.1699 0.0000
2 ENSG00000183395 PMCH pro-melanin concentrating hormone 3.5850 0.0000
3 ENSG00000281344 HELLPAR HELLP associated long non-coding RNA 3.5850 0.0000
4 ENSG00000274056 MIR6507 microRNA 6507 3.0000 0.0000
5 ENSG00000206650 SNORA70G small nucleolar RNA, H/ACA box 70G 2.9308 0.0000
6 ENSG00000234040 RPL10P12 ribosomal protein L10 pseudogene 12 2.9308 0.0000
7 ENSG00000261326 LINC01355 long intergenic non-protein coding RNA 1355 2.8074 0.0000
8 ENSG00000250693 RPF2P2 ribosome production factor 2 homolog pseudogene 2 2.5850 0.0001
9 ENSG00000257721 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (MPP7) pseudogene 2.5850 0.0001
10 ENSG00000223841 novel pseudogene (KIAA0733) 2.3219 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000229262 novel transcript -2.3048 0.0000
63220 ENSG00000258725 PRC1-AS1 PRC1 antisense RNA 1 -2.3047 0.0000
63219 ENSG00000201282 NA -2.3046 0.0000
63218 ENSG00000109270 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 -2.3031 0.0006
63217 ENSG00000047644 WWC3 WWC family member 3 -2.3030 0.0000
63216 ENSG00000203618 GP1BB glycoprotein Ib platelet subunit beta -2.3030 0.0000
63215 ENSG00000199837 RNA5SP71 RNA, 5S ribosomal pseudogene 71 -2.3029 0.0008
63214 ENSG00000272419 LINC01145 long intergenic non-protein coding RNA 1145 -2.3029 0.0000
63213 ENSG00000275215 RNA5-8SN3 RNA, 5.8S ribosomal N3 -2.3028 0.0000
63212 ENSG00000281880 PAUPAR PAX6 upstream antisense RNA -2.3027 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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