Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773745

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773745 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M372	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000253423		sulfite oxidase (SUOX) pseudogene	4.1699	0.0000
2	ENSG00000183395	PMCH	pro-melanin concentrating hormone	3.5850	0.0000
3	ENSG00000281344	HELLPAR	HELLP associated long non-coding RNA	3.5850	0.0000
4	ENSG00000274056	MIR6507	microRNA 6507	3.0000	0.0000
5	ENSG00000206650	SNORA70G	small nucleolar RNA, H/ACA box 70G	2.9308	0.0000
6	ENSG00000234040	RPL10P12	ribosomal protein L10 pseudogene 12	2.9308	0.0000
7	ENSG00000261326	LINC01355	long intergenic non-protein coding RNA 1355	2.8074	0.0000
8	ENSG00000250693	RPF2P2	ribosome production factor 2 homolog pseudogene 2	2.5850	0.0001
9	ENSG00000257721		membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (MPP7) pseudogene	2.5850	0.0001
10	ENSG00000223841		novel pseudogene (KIAA0733)	2.3219	0.0005

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000164976	MYORG	myogenesis regulating glycosidase (putative)	-2.2873	0.0000
63172	ENSG00000168032	ENTPD3	ectonucleoside triphosphate diphosphohydrolase 3	-2.2871	0.0000
63171	ENSG00000115232	ITGA4	integrin subunit alpha 4	-2.2868	0.0000
63170	ENSG00000218839	FAM138C	family with sequence similarity 138 member C	-2.2867	0.0000
63169	ENSG00000277342		novel transcript, sense intronic to BICD1	-2.2864	0.0000
63168	ENSG00000104332	SFRP1	secreted frizzled related protein 1	-2.2863	0.0000
63167	ENSG00000272617		novel protein, COG8-PDF readthrough	-2.2863	0.0000
63166	ENSG00000134326	CMPK2	cytidine/uridine monophosphate kinase 2	-2.2863	0.0000
63165	ENSG00000162723	SLAMF9	SLAM family member 9	-2.2860	0.0000
63164	ENSG00000280355		novel transcript	-2.2858	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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