Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773745

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773745


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M372Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253423 sulfite oxidase (SUOX) pseudogene 4.1699 0.0000
2 ENSG00000183395 PMCH pro-melanin concentrating hormone 3.5850 0.0000
3 ENSG00000281344 HELLPAR HELLP associated long non-coding RNA 3.5850 0.0000
4 ENSG00000274056 MIR6507 microRNA 6507 3.0000 0.0000
5 ENSG00000206650 SNORA70G small nucleolar RNA, H/ACA box 70G 2.9308 0.0000
6 ENSG00000234040 RPL10P12 ribosomal protein L10 pseudogene 12 2.9308 0.0000
7 ENSG00000261326 LINC01355 long intergenic non-protein coding RNA 1355 2.8074 0.0000
8 ENSG00000250693 RPF2P2 ribosome production factor 2 homolog pseudogene 2 2.5850 0.0001
9 ENSG00000257721 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (MPP7) pseudogene 2.5850 0.0001
10 ENSG00000223841 novel pseudogene (KIAA0733) 2.3219 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000164976 MYORG myogenesis regulating glycosidase (putative) -2.2873 0.0000
63172 ENSG00000168032 ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 -2.2871 0.0000
63171 ENSG00000115232 ITGA4 integrin subunit alpha 4 -2.2868 0.0000
63170 ENSG00000218839 FAM138C family with sequence similarity 138 member C -2.2867 0.0000
63169 ENSG00000277342 novel transcript, sense intronic to BICD1 -2.2864 0.0000
63168 ENSG00000104332 SFRP1 secreted frizzled related protein 1 -2.2863 0.0000
63167 ENSG00000272617 novel protein, COG8-PDF readthrough -2.2863 0.0000
63166 ENSG00000134326 CMPK2 cytidine/uridine monophosphate kinase 2 -2.2863 0.0000
63165 ENSG00000162723 SLAMF9 SLAM family member 9 -2.2860 0.0000
63164 ENSG00000280355 novel transcript -2.2858 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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