SHOGoiN Cell Methylome: GSM2773745

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773745


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M372Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253423 sulfite oxidase (SUOX) pseudogene 4.1699 0.0000
2 ENSG00000183395 PMCH pro-melanin concentrating hormone 3.5850 0.0000
3 ENSG00000281344 HELLPAR HELLP associated long non-coding RNA 3.5850 0.0000
4 ENSG00000274056 MIR6507 microRNA 6507 3.0000 0.0000
5 ENSG00000206650 SNORA70G small nucleolar RNA, H/ACA box 70G 2.9308 0.0000
6 ENSG00000234040 RPL10P12 ribosomal protein L10 pseudogene 12 2.9308 0.0000
7 ENSG00000261326 LINC01355 long intergenic non-protein coding RNA 1355 2.8074 0.0000
8 ENSG00000250693 RPF2P2 ribosome production factor 2 homolog pseudogene 2 2.5850 0.0001
9 ENSG00000257721 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (MPP7) pseudogene 2.5850 0.0001
10 ENSG00000223841 novel pseudogene (KIAA0733) 2.3219 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000224807 DUX4L9 double homeobox 4 like 9 (pseudogene) -2.3382 0.0000
63340 ENSG00000283474 MIR6828 microRNA 6828 -2.3380 0.0000
63339 ENSG00000222532 MIR1468 microRNA 1468 -2.3361 0.0000
63338 ENSG00000204311 PJVK pejvakin -2.3360 0.0000
63337 ENSG00000006015 REX1BD required for excision 1-B domain containing -2.3360 0.0000
63336 ENSG00000281383 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -2.3358 0.0000
63335 ENSG00000180592 SKIDA1 SKI/DACH domain containing 1 -2.3357 0.0000
63334 ENSG00000247381 PLUT PDX1 associated lncRNA, upregulator of transcription -2.3355 0.0000
63333 ENSG00000142748 FCN3 ficolin 3 -2.3352 0.0000
63332 ENSG00000270617 URGCP-MRPS24 URGCP-MRPS24 readthrough -2.3352 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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