Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773745

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773745 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M372	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000253423		sulfite oxidase (SUOX) pseudogene	4.1699	0.0000
2	ENSG00000183395	PMCH	pro-melanin concentrating hormone	3.5850	0.0000
3	ENSG00000281344	HELLPAR	HELLP associated long non-coding RNA	3.5850	0.0000
4	ENSG00000274056	MIR6507	microRNA 6507	3.0000	0.0000
5	ENSG00000206650	SNORA70G	small nucleolar RNA, H/ACA box 70G	2.9308	0.0000
6	ENSG00000234040	RPL10P12	ribosomal protein L10 pseudogene 12	2.9308	0.0000
7	ENSG00000261326	LINC01355	long intergenic non-protein coding RNA 1355	2.8074	0.0000
8	ENSG00000250693	RPF2P2	ribosome production factor 2 homolog pseudogene 2	2.5850	0.0001
9	ENSG00000257721		membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) (MPP7) pseudogene	2.5850	0.0001
10	ENSG00000223841		novel pseudogene (KIAA0733)	2.3219	0.0005

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000229262		novel transcript	-2.3048	0.0000
63220	ENSG00000258725	PRC1-AS1	PRC1 antisense RNA 1	-2.3047	0.0000
63219	ENSG00000201282		NA	-2.3046	0.0000
63218	ENSG00000109270	LAMTOR3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	-2.3031	0.0006
63217	ENSG00000047644	WWC3	WWC family member 3	-2.3030	0.0000
63216	ENSG00000203618	GP1BB	glycoprotein Ib platelet subunit beta	-2.3030	0.0000
63215	ENSG00000199837	RNA5SP71	RNA, 5S ribosomal pseudogene 71	-2.3029	0.0008
63214	ENSG00000272419	LINC01145	long intergenic non-protein coding RNA 1145	-2.3029	0.0000
63213	ENSG00000275215	RNA5-8SN3	RNA, 5.8S ribosomal N3	-2.3028	0.0000
63212	ENSG00000281880	PAUPAR	PAX6 upstream antisense RNA	-2.3027	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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