Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773746

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773746


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M373Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243872 RN7SL464P RNA, 7SL, cytoplasmic 464, pseudogene 3.0000 0.0000
2 ENSG00000248112 novel transcript 3.0000 0.0000
3 ENSG00000251691 UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3) pseudogene 3.0000 0.0000
4 ENSG00000241008 ribosomal protein L7a (RPL7A) pseudogene 2.8074 0.0000
5 ENSG00000225842 GGCTP3 GGCT pseudogene 3 2.6356 0.0000
6 ENSG00000200884 Y RNA 2.5850 0.0001
7 ENSG00000221891 FAM218BP family with sequence similarity 218 member B, pseudogene 2.5850 0.0001
8 ENSG00000226376 novel transcript 2.5850 0.0001
9 ENSG00000248944 FAM90A6P family with sequence similarity 90 member A6, pseudogene 2.5850 0.0000
10 ENSG00000284135 MIR3654 microRNA 3654 2.4634 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000234571 H2BP2 H2B histone pseudogene 2 -2.1703 0.0000
63127 ENSG00000225158 HSPE1P24 heat shock protein family E (Hsp10) member 1 pseudogene 24 -2.1703 0.0000
63126 ENSG00000244239 novel transcript, antisense to ICA1 -2.1702 0.0000
63125 ENSG00000169750 RAC3 Rac family small GTPase 3 -2.1700 0.0000
63124 ENSG00000164484 TMEM200A transmembrane protein 200A -2.1697 0.0000
63123 ENSG00000198890 PRMT6 protein arginine methyltransferase 6 -2.1694 0.0000
63122 ENSG00000254161 IGLVIV-65 immunoglobulin lambda variable (IV)-65 (pseudogene) -2.1693 0.0000
63121 ENSG00000175764 TTLL11 tubulin tyrosine ligase like 11 -2.1693 0.0000
63120 ENSG00000230306 BANF1P2 BANF1 pseudogene 2 -2.1690 0.0000
63119 ENSG00000179774 ATOH7 atonal bHLH transcription factor 7 -2.1685 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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