SHOGoiN Cell Methylome: GSM2773746

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773746


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M373Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243872 RN7SL464P RNA, 7SL, cytoplasmic 464, pseudogene 3.0000 0.0000
2 ENSG00000248112 novel transcript 3.0000 0.0000
3 ENSG00000251691 UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3) pseudogene 3.0000 0.0000
4 ENSG00000241008 ribosomal protein L7a (RPL7A) pseudogene 2.8074 0.0000
5 ENSG00000225842 chromosome 7 open reading frame 24 (C7orf24) pseudogene 2.6356 0.0000
6 ENSG00000200884 NA 2.5850 0.0001
7 ENSG00000221891 FAM218BP family with sequence similarity 218 member B, pseudogene 2.5850 0.0001
8 ENSG00000226376 novel transcript 2.5850 0.0001
9 ENSG00000248944 FAM90A6P family with sequence similarity 90 member A6, pseudogene 2.5850 0.0000
10 ENSG00000284135 MIR3654 microRNA 3654 2.4634 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000264171 MIR4305 microRNA 4305 -2.2380 0.0000
63340 ENSG00000212541 RNU6-510P RNA, U6 small nuclear 510, pseudogene -2.2374 0.0000
63339 ENSG00000164256 PRDM9 PR/SET domain 9 -2.2368 0.0000
63338 ENSG00000234646 novel transcript, sense overlapping SSTR4 -2.2368 0.0000
63337 ENSG00000095203 EPB41L4B erythrocyte membrane protein band 4.1 like 4B -2.2365 0.0000
63336 ENSG00000259369 ribosomal protein L19 (RPL19) pseudogene -2.2365 0.0000
63335 ENSG00000151304 SRFBP1 serum response factor binding protein 1 -2.2364 0.0000
63334 ENSG00000145545 SRD5A1 steroid 5 alpha-reductase 1 -2.2354 0.0000
63333 ENSG00000277369 novel transcript -2.2350 0.0000
63332 ENSG00000267355 RPL9P29 ribosomal protein L9 pseudogene 29 -2.2347 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...