Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773747
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773747
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M374
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000206950
Y RNA
3.0000
0.0000
2
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
2.8190
0.0000
3
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
2.3678
0.0000
4
ENSG00000270763
DDX43P2
DEAD-box helicase 43 pseudogene 2
2.3219
0.0006
5
ENSG00000213110
RNF11P1
ring finger protein 11 pseudogene 1
2.1732
0.0000
6
ENSG00000229132
EIF4A1P10
eukaryotic translation initiation factor 4A1 pseudogene 10
2.1273
0.0000
7
ENSG00000224712
NPIPA3
nuclear pore complex interacting protein family member A3
2.0000
0.0000
8
ENSG00000258844
novel transcript
2.0000
0.0039
9
ENSG00000260933
geminin, DNA replication inhibitor (GMNN) pseudogene
2.0000
0.0039
10
ENSG00000261523
novel transcript, antisense to a novel member of the nuclear pore complex interacting protein-like NPIPL gene family
2.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000274849
novel transcript, sense intronic to MOCOS
-2.0969
0.0000
63127
ENSG00000182636
NDN
necdin, MAGE family member
-2.0965
0.0000
63126
ENSG00000260011
novel transcript
-2.0963
0.0000
63125
ENSG00000243629
LINC00880
long intergenic non-protein coding RNA 880
-2.0961
0.0000
63124
ENSG00000230778
ANKRD63
ankyrin repeat domain 63
-2.0957
0.0000
63123
ENSG00000131668
BARX1
BARX homeobox 1
-2.0956
0.0000
63122
ENSG00000205269
TMEM170B
transmembrane protein 170B
-2.0954
0.0000
63121
ENSG00000238358
novel transcript
-2.0950
0.0000
63120
ENSG00000112902
SEMA5A
semaphorin 5A
-2.0947
0.0000
63119
ENSG00000146360
GPR6
G protein-coupled receptor 6
-2.0943
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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