Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773747

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773747


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M374Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206950 Y RNA 3.0000 0.0000
2 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.8190 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.3678 0.0000
4 ENSG00000270763 DDX43P2 DEAD-box helicase 43 pseudogene 2 2.3219 0.0006
5 ENSG00000213110 RNF11P1 ring finger protein 11 pseudogene 1 2.1732 0.0000
6 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.1273 0.0000
7 ENSG00000224712 NPIPA3 nuclear pore complex interacting protein family member A3 2.0000 0.0000
8 ENSG00000258844 novel transcript 2.0000 0.0039
9 ENSG00000260933 geminin, DNA replication inhibitor (GMNN) pseudogene 2.0000 0.0039
10 ENSG00000261523 novel transcript, antisense to a novel member of the nuclear pore complex interacting protein-like NPIPL gene family 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000274849 novel transcript, sense intronic to MOCOS -2.0969 0.0000
63127 ENSG00000182636 NDN necdin, MAGE family member -2.0965 0.0000
63126 ENSG00000260011 novel transcript -2.0963 0.0000
63125 ENSG00000243629 LINC00880 long intergenic non-protein coding RNA 880 -2.0961 0.0000
63124 ENSG00000230778 ANKRD63 ankyrin repeat domain 63 -2.0957 0.0000
63123 ENSG00000131668 BARX1 BARX homeobox 1 -2.0956 0.0000
63122 ENSG00000205269 TMEM170B transmembrane protein 170B -2.0954 0.0000
63121 ENSG00000238358 novel transcript -2.0950 0.0000
63120 ENSG00000112902 SEMA5A semaphorin 5A -2.0947 0.0000
63119 ENSG00000146360 GPR6 G protein-coupled receptor 6 -2.0943 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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