SHOGoiN Cell Methylome: GSM2773747
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773747 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M374 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000206950 | NA | 3.0000 | 0.0000 | |
| 2 | ENSG00000228519 | RAN binding protein 1 pseudogene | 2.8190 | 0.0000 | |
| 3 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 2.3678 | 0.0000 | |
| 4 | ENSG00000270763 | DDX43P2 | DEAD-box helicase 43 pseudogene 2 | 2.3219 | 0.0006 |
| 5 | ENSG00000213110 | ring finger protein 11 (RNF11) pseudogene | 2.1732 | 0.0000 | |
| 6 | ENSG00000229132 | EIF4A1P10 | eukaryotic translation initiation factor 4A1 pseudogene 10 | 2.1273 | 0.0000 |
| 7 | ENSG00000224712 | NPIPA3 | nuclear pore complex interacting protein family member A3 | 2.0000 | 0.0000 |
| 8 | ENSG00000258844 | novel transcript | 2.0000 | 0.0039 | |
| 9 | ENSG00000260933 | geminin, DNA replication inhibitor (GMNN) pseudogene | 2.0000 | 0.0039 | |
| 10 | ENSG00000261523 | novel transcript, antisense to a novel member of the nuclear pore complex interacting protein-like NPIPL gene family | 2.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000100399 | CHADL | chondroadherin like | -2.1659 | 0.0000 |
| 63340 | ENSG00000232977 | LINC00327 | long intergenic non-protein coding RNA 327 | -2.1651 | 0.0000 |
| 63339 | ENSG00000223886 | ring finger protein 181 (RNF181) pseudogene | -2.1637 | 0.0000 | |
| 63338 | ENSG00000170191 | NANP | N-acetylneuraminic acid phosphatase | -2.1633 | 0.0000 |
| 63337 | ENSG00000263697 | MIR3621 | microRNA 3621 | -2.1629 | 0.0000 |
| 63336 | ENSG00000189431 | RASSF10 | Ras association domain family member 10 | -2.1626 | 0.0000 |
| 63335 | ENSG00000273413 | novel transcript, antisense to ADIRF | -2.1620 | 0.0000 | |
| 63334 | ENSG00000164746 | C7orf57 | chromosome 7 open reading frame 57 | -2.1614 | 0.0000 |
| 63333 | ENSG00000259285 | novel transcript, antisense to ALDH1A2 | -2.1607 | 0.0000 | |
| 63332 | ENSG00000280414 | novel transcript | -2.1607 | 0.0000 |
