Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773747

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773747 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M374	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000206950		Y RNA	3.0000	0.0000
2	ENSG00000228519	RANBP1P1	RANBP1 pseudogene 1	2.8190	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.3678	0.0000
4	ENSG00000270763	DDX43P2	DEAD-box helicase 43 pseudogene 2	2.3219	0.0006
5	ENSG00000213110	RNF11P1	ring finger protein 11 pseudogene 1	2.1732	0.0000
6	ENSG00000229132	EIF4A1P10	eukaryotic translation initiation factor 4A1 pseudogene 10	2.1273	0.0000
7	ENSG00000224712	NPIPA3	nuclear pore complex interacting protein family member A3	2.0000	0.0000
8	ENSG00000258844		novel transcript	2.0000	0.0039
9	ENSG00000260933		geminin, DNA replication inhibitor (GMNN) pseudogene	2.0000	0.0039
10	ENSG00000261523		novel transcript, antisense to a novel member of the nuclear pore complex interacting protein-like NPIPL gene family	2.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000274849		novel transcript, sense intronic to MOCOS	-2.0969	0.0000
63127	ENSG00000182636	NDN	necdin, MAGE family member	-2.0965	0.0000
63126	ENSG00000260011		novel transcript	-2.0963	0.0000
63125	ENSG00000243629	LINC00880	long intergenic non-protein coding RNA 880	-2.0961	0.0000
63124	ENSG00000230778	ANKRD63	ankyrin repeat domain 63	-2.0957	0.0000
63123	ENSG00000131668	BARX1	BARX homeobox 1	-2.0956	0.0000
63122	ENSG00000205269	TMEM170B	transmembrane protein 170B	-2.0954	0.0000
63121	ENSG00000238358		novel transcript	-2.0950	0.0000
63120	ENSG00000112902	SEMA5A	semaphorin 5A	-2.0947	0.0000
63119	ENSG00000146360	GPR6	G protein-coupled receptor 6	-2.0943	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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