Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773748

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773748


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M375Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000075624 ACTB actin beta 3.1693 0.0000
2 ENSG00000070501 POLB DNA polymerase beta 2.7823 0.0000
3 ENSG00000240395 RPL5P23 ribosomal protein L5 pseudogene 23 2.7823 0.0000
4 ENSG00000111057 KRT18 keratin 18 2.6595 0.0000
5 ENSG00000263508 novel transcript 2.5850 0.0000
7 ENSG00000217889 KRT18P48 keratin 18 pseudogene 48 2.5355 0.0000
9 ENSG00000245667 novel transcript 2.4526 0.0000
10 ENSG00000170421 KRT8 keratin 8 2.4505 0.0000
63119 ENSG00000230240 RPL34P19 ribosomal protein L34 pseudogene 19 -1.0000 0.3471
63120 ENSG00000230306 BANF1P2 BANF1 pseudogene 2 -1.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000231062 putative novel transcript -1.0000 1.0000
63127 ENSG00000230988 RPL23AP11 ribosomal protein L23a pseudogene 11 -1.0000 1.0000
63126 ENSG00000230807 ubiquitin pseudogene -1.0000 0.0074
63125 ENSG00000230753 ZNF341-AS1 ZNF341 antisense RNA 1 -1.0000 0.0322
63124 ENSG00000230721 ribosomal protein L17 (RPL17) pseudogene -1.0000 0.5795
63123 ENSG00000230711 CTAGE13P CTAGE family member 13, pseudogene -1.0000 0.3651
63122 ENSG00000230590 FTX FTX transcript, XIST regulator -1.0000 0.0787
63121 ENSG00000230568 SF3A3P1 splicing factor 3a, subunit 3 pseudogene 1 -1.0000 1.0000
63120 ENSG00000230306 BANF1P2 BANF1 pseudogene 2 -1.0000 1.0000
63119 ENSG00000230240 RPL34P19 ribosomal protein L34 pseudogene 19 -1.0000 0.3471

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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