Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773749

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773749 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M376	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.6419	0.0000
2	ENSG00000228519	RANBP1P1	RANBP1 pseudogene 1	2.6286	0.0000
3	ENSG00000284135	MIR3654	microRNA 3654	2.2523	0.0000
4	ENSG00000214182	PTMAP5	prothymosin alpha pseudogene 5	1.9047	0.0000
6	ENSG00000249353	NPM1P27	nucleophosmin 1 pseudogene 27	1.8713	0.0000
7	ENSG00000229132	EIF4A1P10	eukaryotic translation initiation factor 4A1 pseudogene 10	1.7575	0.0000
8	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	1.7225	0.0000
9	ENSG00000233328	PFN1P1	profilin 1 pseudogene 1	1.6793	0.0000
10	ENSG00000242175	RN7SL127P	RNA, 7SL, cytoplasmic 127, pseudogene	1.6610	0.0000
63119	ENSG00000241570	PAQR9-AS1	PAQR9 antisense RNA 1	-2.0424	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000152192	POU4F1	POU class 4 homeobox 1	-2.0442	0.0000
63127	ENSG00000255808	PDE2A-AS1	PDE2A antisense RNA 1	-2.0442	0.0000
63126	ENSG00000244953		novel transcript	-2.0438	0.0000
63125	ENSG00000235194	PPP1R3E	protein phosphatase 1 regulatory subunit 3E	-2.0436	0.0000
63124	ENSG00000254854		novel transcript	-2.0434	0.0000
63123	ENSG00000138439	FAM117B	family with sequence similarity 117 member B	-2.0430	0.0000
63122	ENSG00000198355	PIM3	Pim-3 proto-oncogene, serine/threonine kinase	-2.0430	0.0000
63121	ENSG00000264177		novel transcript	-2.0427	0.0000
63120	ENSG00000200351		Y RNA	-2.0425	0.0000
63119	ENSG00000241570	PAQR9-AS1	PAQR9 antisense RNA 1	-2.0424	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...