SHOGoiN Cell Methylome: GSM2773749

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773749


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M376Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.6419 0.0000
2 ENSG00000228519 RAN binding protein 1 pseudogene 2.6286 0.0000
3 ENSG00000284135 MIR3654 microRNA 3654 2.2523 0.0000
4 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 1.9047 0.0000
6 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 1.8713 0.0000
7 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 1.7575 0.0000
8 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.7225 0.0000
9 ENSG00000233328 PFN1P1 profilin 1 pseudogene 1 1.6793 0.0000
10 ENSG00000242175 RN7SL127P RNA, 7SL, cytoplasmic 127, pseudogene 1.6610 0.0000
63332 ENSG00000202265 RNU6-596P RNA, U6 small nuclear 596, pseudogene -2.1025 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000235601 BARX1-DT BARX1 divergent transcript -2.1047 0.0000
63340 ENSG00000187068 C3orf70 chromosome 3 open reading frame 70 -2.1042 0.0000
63339 ENSG00000136327 NKX2-8 NK2 homeobox 8 -2.1039 0.0000
63338 ENSG00000075388 FGF4 fibroblast growth factor 4 -2.1037 0.0000
63337 ENSG00000233108 novel transcript -2.1033 0.0000
63336 ENSG00000163935 SFMBT1 Scm like with four mbt domains 1 -2.1032 0.0000
63335 ENSG00000136826 KLF4 Kruppel like factor 4 -2.1028 0.0000
63334 ENSG00000135638 EMX1 empty spiracles homeobox 1 -2.1027 0.0000
63333 ENSG00000264493 MIR4298 microRNA 4298 -2.1027 0.0000
63332 ENSG00000202265 RNU6-596P RNA, U6 small nuclear 596, pseudogene -2.1025 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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