SHOGoiN Cell Methylome: GSM2773749
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773749 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M376 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 2.6419 | 0.0000 | |
| 2 | ENSG00000228519 | RAN binding protein 1 pseudogene | 2.6286 | 0.0000 | |
| 3 | ENSG00000284135 | MIR3654 | microRNA 3654 | 2.2523 | 0.0000 |
| 4 | ENSG00000214182 | PTMAP5 | prothymosin alpha pseudogene 5 | 1.9047 | 0.0000 |
| 6 | ENSG00000249353 | NPM1P27 | nucleophosmin 1 pseudogene 27 | 1.8713 | 0.0000 |
| 7 | ENSG00000229132 | EIF4A1P10 | eukaryotic translation initiation factor 4A1 pseudogene 10 | 1.7575 | 0.0000 |
| 8 | ENSG00000229638 | RPL4P4 | ribosomal protein L4 pseudogene 4 | 1.7225 | 0.0000 |
| 9 | ENSG00000233328 | PFN1P1 | profilin 1 pseudogene 1 | 1.6793 | 0.0000 |
| 10 | ENSG00000242175 | RN7SL127P | RNA, 7SL, cytoplasmic 127, pseudogene | 1.6610 | 0.0000 |
| 63332 | ENSG00000202265 | RNU6-596P | RNA, U6 small nuclear 596, pseudogene | -2.1025 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000235601 | BARX1-DT | BARX1 divergent transcript | -2.1047 | 0.0000 |
| 63340 | ENSG00000187068 | C3orf70 | chromosome 3 open reading frame 70 | -2.1042 | 0.0000 |
| 63339 | ENSG00000136327 | NKX2-8 | NK2 homeobox 8 | -2.1039 | 0.0000 |
| 63338 | ENSG00000075388 | FGF4 | fibroblast growth factor 4 | -2.1037 | 0.0000 |
| 63337 | ENSG00000233108 | novel transcript | -2.1033 | 0.0000 | |
| 63336 | ENSG00000163935 | SFMBT1 | Scm like with four mbt domains 1 | -2.1032 | 0.0000 |
| 63335 | ENSG00000136826 | KLF4 | Kruppel like factor 4 | -2.1028 | 0.0000 |
| 63334 | ENSG00000135638 | EMX1 | empty spiracles homeobox 1 | -2.1027 | 0.0000 |
| 63333 | ENSG00000264493 | MIR4298 | microRNA 4298 | -2.1027 | 0.0000 |
| 63332 | ENSG00000202265 | RNU6-596P | RNA, U6 small nuclear 596, pseudogene | -2.1025 | 0.0000 |
