Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773749
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773749
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M376
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
2.6419
0.0000
2
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
2.6286
0.0000
3
ENSG00000284135
MIR3654
microRNA 3654
2.2523
0.0000
4
ENSG00000214182
PTMAP5
prothymosin alpha pseudogene 5
1.9047
0.0000
6
ENSG00000249353
NPM1P27
nucleophosmin 1 pseudogene 27
1.8713
0.0000
7
ENSG00000229132
EIF4A1P10
eukaryotic translation initiation factor 4A1 pseudogene 10
1.7575
0.0000
8
ENSG00000229638
RPL4P4
ribosomal protein L4 pseudogene 4
1.7225
0.0000
9
ENSG00000233328
PFN1P1
profilin 1 pseudogene 1
1.6793
0.0000
10
ENSG00000242175
RN7SL127P
RNA, 7SL, cytoplasmic 127, pseudogene
1.6610
0.0000
63119
ENSG00000241570
PAQR9-AS1
PAQR9 antisense RNA 1
-2.0424
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000152192
POU4F1
POU class 4 homeobox 1
-2.0442
0.0000
63127
ENSG00000255808
PDE2A-AS1
PDE2A antisense RNA 1
-2.0442
0.0000
63126
ENSG00000244953
novel transcript
-2.0438
0.0000
63125
ENSG00000235194
PPP1R3E
protein phosphatase 1 regulatory subunit 3E
-2.0436
0.0000
63124
ENSG00000254854
novel transcript
-2.0434
0.0000
63123
ENSG00000138439
FAM117B
family with sequence similarity 117 member B
-2.0430
0.0000
63122
ENSG00000198355
PIM3
Pim-3 proto-oncogene, serine/threonine kinase
-2.0430
0.0000
63121
ENSG00000264177
novel transcript
-2.0427
0.0000
63120
ENSG00000200351
Y RNA
-2.0425
0.0000
63119
ENSG00000241570
PAQR9-AS1
PAQR9 antisense RNA 1
-2.0424
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...