Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773750

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773750


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M377Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212628 RNA5SP241 RNA, 5S ribosomal pseudogene 241 2.8074 0.0000
2 ENSG00000243675 RPL35AP9 ribosomal protein L35a pseudogene 9 2.7925 0.0000
3 ENSG00000253934 MRPL49P2 mitochondrial ribosomal protein L49 pseudogene 2 2.5850 0.0000
4 ENSG00000265165 MIR4307 microRNA 4307 2.5850 0.0001
6 ENSG00000206806 Y RNA 2.3219 0.0006
7 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.3219 0.0006
8 ENSG00000227854 ribosomal protein L39 (RPL39) pseudogene 2.3219 0.0000
9 ENSG00000229600 novel transcript 2.3219 0.0006
10 ENSG00000251452 adrenocortical dysplasia homolog (mouse) (ACD) pseudogene 2.3219 0.0006
63119 ENSG00000177301 KCNA2 potassium voltage-gated channel subfamily A member 2 -2.2708 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000260428 SCX scleraxis bHLH transcription factor -2.2728 0.0000
63127 ENSG00000267909 CCDC177 coiled-coil domain containing 177 -2.2726 0.0000
63126 ENSG00000138434 ITPRID2 ITPR interacting domain containing 2 -2.2723 0.0000
63125 ENSG00000272163 novel transcript, antisense to NEFM -2.2720 0.0000
63124 ENSG00000182103 FAM181B family with sequence similarity 181 member B -2.2716 0.0000
63123 ENSG00000165606 DRGX dorsal root ganglia homeobox -2.2715 0.0000
63122 ENSG00000169955 ZNF747 zinc finger protein 747 -2.2714 0.0000
63121 ENSG00000238961 SNORA47 small nucleolar RNA, H/ACA box 47 -2.2711 0.0000
63120 ENSG00000234740 novel transcript -2.2708 0.0000
63119 ENSG00000177301 KCNA2 potassium voltage-gated channel subfamily A member 2 -2.2708 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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