SHOGoiN Cell Methylome: GSM2773750

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773750


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M377Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212628 RNA5SP241 RNA, 5S ribosomal pseudogene 241 2.8074 0.0000
2 ENSG00000243675 ribosomal protein L35a (RPL35A) pseudogene 2.7925 0.0000
3 ENSG00000253934 MRPL49P2 mitochondrial ribosomal protein L49 pseudogene 2 2.5850 0.0000
4 ENSG00000265165 MIR4307 microRNA 4307 2.5850 0.0001
6 ENSG00000206806 NA 2.3219 0.0006
7 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.3219 0.0006
8 ENSG00000227854 ribosomal protein L39 (RPL39) pseudogene 2.3219 0.0000
9 ENSG00000229600 novel transcript 2.3219 0.0006
10 ENSG00000251452 adrenocortical dysplasia homolog (mouse) (ACD) pseudogene 2.3219 0.0006
63332 ENSG00000139289 PHLDA1 pleckstrin homology like domain family A member 1 -2.3303 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000278966 TEC -2.3333 0.0000
63340 ENSG00000277173 novel transcript, sense intronic to SLC48A1 -2.3333 0.0000
63339 ENSG00000151136 BTBD11 BTB domain containing 11 -2.3332 0.0000
63338 ENSG00000011201 ANOS1 anosmin 1 -2.3329 0.0000
63337 ENSG00000263697 MIR3621 microRNA 3621 -2.3328 0.0000
63336 ENSG00000149806 FAU FAU ubiquitin like and ribosomal protein S30 fusion -2.3323 0.0000
63335 ENSG00000256254 spastic ataxia of Charlevoix-Saguenay (SACS) pseudogene -2.3320 0.0000
63334 ENSG00000260902 LINC02011 long intergenic non-protein coding RNA 2011 -2.3310 0.0000
63332 ENSG00000139289 PHLDA1 pleckstrin homology like domain family A member 1 -2.3303 0.0000
10 ENSG00000251452 adrenocortical dysplasia homolog (mouse) (ACD) pseudogene 2.3219 0.0006

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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