SHOGoiN Cell Methylome: GSM2773751

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773751


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M378Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199601 RNU6-562P RNA, U6 small nuclear 562, pseudogene 3.9069 0.0000
2 ENSG00000229661 BUD31P2 BUD31 homolog pseudogene 2 3.9069 0.0000
3 ENSG00000007129 CEACAM21 carcinoembryonic antigen related cell adhesion molecule 21 3.6427 0.0000
4 ENSG00000276600 RAB7B RAB7B, member RAS oncogene family 3.4594 0.0000
5 ENSG00000100060 MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 3.3900 0.0000
6 ENSG00000231616 novel transcript, antisense to KIF27 3.3219 0.0000
7 ENSG00000244921 MTCYBP18 MT-CYB pseudogene 18 3.2823 0.0000
8 ENSG00000081870 HSPB11 heat shock protein family B (small) member 11 3.1699 0.0000
9 ENSG00000066827 ZFAT zinc finger and AT-hook domain containing 3.0000 0.0001
10 ENSG00000110944 IL23A interleukin 23 subunit alpha 3.0000 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000224159 HMGB1P9 high mobility group box 1 pseudogene 9 -2.0000 0.0249
63340 ENSG00000224014 SMT3 suppressor of mif two 3 homolog 3 (yeast) (SUMO3) pseudogene -2.0000 0.5636
63339 ENSG00000223921 MTND1P27 MT-ND1 pseudogene 27 -2.0000 0.1938
63338 ENSG00000223820 CFL1P1 cofilin 1 pseudogene 1 -2.0000 0.5636
63337 ENSG00000223669 novel transcript -2.0000 0.0690
63336 ENSG00000223628 ribosomal protein L39 (RPL39) pseudogene -2.0000 0.0690
63335 ENSG00000220884 MESTP1 mesoderm specific transcript pseudogene 1 -2.0000 0.0690
63334 ENSG00000218690 HIST1H2APS4 histone cluster 1 H2A pseudogene 4 -2.0000 0.0033
63333 ENSG00000214719 novel transcript -2.0000 0.0000
63332 ENSG00000214288 HMGB3P13 high mobility group box 3 pseudogene 13 -2.0000 0.1156

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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