Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773751

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773751


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M378Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199601 RNU6-562P RNA, U6 small nuclear 562, pseudogene 3.9069 0.0000
2 ENSG00000229661 BUD31P2 BUD31 homolog pseudogene 2 3.9069 0.0000
3 ENSG00000007129 CEACAM21 CEA cell adhesion molecule 21 3.6427 0.0000
4 ENSG00000276600 RAB7B RAB7B, member RAS oncogene family 3.4594 0.0000
5 ENSG00000100060 MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 3.3900 0.0000
6 ENSG00000231616 novel transcript, antisense to KIF27 3.3219 0.0000
7 ENSG00000244921 MTCYBP18 MT-CYB pseudogene 18 3.2823 0.0000
8 ENSG00000081870 HSPB11 heat shock protein family B (small) member 11 3.1699 0.0000
9 ENSG00000066827 ZFAT zinc finger and AT-hook domain containing 3.0000 0.0001
10 ENSG00000110944 IL23A interleukin 23 subunit alpha 3.0000 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000137101 CD72 CD72 molecule -1.9107 0.0000
63127 ENSG00000263681 MIR3197 microRNA 3197 -1.9101 0.0091
63126 ENSG00000259031 novel transcript -1.9101 0.0219
63125 ENSG00000236474 GCNT1P1 glucosaminyl (N-acetyl) transferase 1 pseudogene 1 -1.9099 0.0259
63124 ENSG00000164897 TMUB1 transmembrane and ubiquitin like domain containing 1 -1.9096 0.0000
63123 ENSG00000164896 FASTK Fas activated serine/threonine kinase -1.9096 0.0000
63122 ENSG00000229780 UBE2Q1-AS1 UBE2Q1 antisense RNA 1 -1.9089 0.0079
63121 ENSG00000160714 UBE2Q1 ubiquitin conjugating enzyme E2 Q1 -1.9089 0.0079
63120 ENSG00000229401 MIR5689HG MIR5689 host gene -1.9057 0.0020
63119 ENSG00000068976 PYGM glycogen phosphorylase, muscle associated -1.9052 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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