Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773752

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773752


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M379Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200151 RN7SKP231 RN7SK pseudogene 231 3.5850 0.0000
2 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 3.5850 0.0000
3 ENSG00000258877 ATP5F1AP4 ATP synthase F1 subunit alpha pseudogene 4 3.5850 0.0000
4 ENSG00000172209 GPR22 G protein-coupled receptor 22 3.3219 0.0000
5 ENSG00000248362 novel transcript 3.3219 0.0000
6 ENSG00000251320 novel transcript 3.3219 0.0000
7 ENSG00000258225 novel transcript, antisense to NAV3 3.3219 0.0000
8 ENSG00000242781 LINC02050 long intergenic non-protein coding RNA 2050 3.1699 0.0000
9 ENSG00000240950 ribosomal protein L8 (RPL8) pseudogene 3.0349 0.0000
10 ENSG00000199786 RNA5SP188 RNA, 5S ribosomal pseudogene 188 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000230173 LINC01790 long intergenic non-protein coding RNA 1790 -2.5850 0.5915
63127 ENSG00000229562 ZFYVE9P1 zinc finger FYVE-type containing 9 pseudogene 1 -2.5850 0.2253
63126 ENSG00000228836 CT45A5 cancer/testis antigen family 45 member A5 -2.5850 0.0089
63125 ENSG00000228687 pseudogene similar to a hypothetical protein (FLJ10996) -2.5850 0.5915
63124 ENSG00000227336 LINC00434 long intergenic non-protein coding RNA 434 -2.5850 0.0379
63123 ENSG00000214434 NIFKP1 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 1 -2.5850 0.2253
63122 ENSG00000213526 SETP8 SET pseudogene 8 -2.5850 0.5915
63121 ENSG00000205456 TP53TG3D TP53 target 3D -2.5850 0.0001
63120 ENSG00000201065 RNU6-461P RNA, U6 small nuclear 461, pseudogene -2.5850 0.5915
63119 ENSG00000196427 NBPF4 NBPF member 4 -2.5850 0.2253

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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