SHOGoiN Cell Methylome: GSM2773752
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773752 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M379 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000200151 | RN7SKP231 | RN7SK pseudogene 231 | 3.5850 | 0.0000 |
| 2 | ENSG00000257807 | starch binding domain 1 (STBD1) pseudogene | 3.5850 | 0.0000 | |
| 3 | ENSG00000258877 | ATP5F1AP4 | ATP synthase F1 subunit alpha pseudogene 4 | 3.5850 | 0.0000 |
| 4 | ENSG00000172209 | GPR22 | G protein-coupled receptor 22 | 3.3219 | 0.0000 |
| 5 | ENSG00000248362 | novel transcript | 3.3219 | 0.0000 | |
| 6 | ENSG00000251320 | novel transcript | 3.3219 | 0.0000 | |
| 7 | ENSG00000258225 | novel transcript, antisense to NAV3 | 3.3219 | 0.0000 | |
| 8 | ENSG00000242781 | LINC02050 | long intergenic non-protein coding RNA 2050 | 3.1699 | 0.0000 |
| 9 | ENSG00000240950 | ribosomal protein L8 (RPL8) pseudogene | 3.0349 | 0.0000 | |
| 10 | ENSG00000199786 | RNA5SP188 | RNA, 5S ribosomal pseudogene 188 | 3.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000272543 | MIR4787 | microRNA 4787 | -2.6656 | 0.0000 |
| 63340 | ENSG00000127990 | SGCE | sarcoglycan epsilon | -2.6647 | 0.0000 |
| 63339 | ENSG00000214702 | COMM domain containing 4 (COMMD4) pseudogene | -2.6646 | 0.0000 | |
| 63338 | ENSG00000182183 | SHISAL2A | shisa like 2A | -2.6642 | 0.0000 |
| 63337 | ENSG00000272031 | ANKRD34A | ankyrin repeat domain 34A | -2.6641 | 0.0000 |
| 63336 | ENSG00000253955 | novel transcript | -2.6639 | 0.0000 | |
| 63335 | ENSG00000256948 | novel transcript | -2.6620 | 0.0000 | |
| 63334 | ENSG00000250662 | HNRNPKP5 | heterogeneous nuclear ribonucleoprotein K pseudogene 5 | -2.6618 | 0.0000 |
| 63333 | ENSG00000237267 | LINC01519 | long intergenic non-protein coding RNA 1519 | -2.6610 | 0.1399 |
| 63332 | ENSG00000229236 | TTTY10 | testis-specific transcript, Y-linked 10 | -2.6610 | 0.2361 |
