Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773752
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773752
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M379
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000200151
RN7SKP231
RN7SK pseudogene 231
3.5850
0.0000
2
ENSG00000257807
starch binding domain 1 (STBD1) pseudogene
3.5850
0.0000
3
ENSG00000258877
ATP5F1AP4
ATP synthase F1 subunit alpha pseudogene 4
3.5850
0.0000
4
ENSG00000172209
GPR22
G protein-coupled receptor 22
3.3219
0.0000
5
ENSG00000248362
novel transcript
3.3219
0.0000
6
ENSG00000251320
novel transcript
3.3219
0.0000
7
ENSG00000258225
novel transcript, antisense to NAV3
3.3219
0.0000
8
ENSG00000242781
LINC02050
long intergenic non-protein coding RNA 2050
3.1699
0.0000
9
ENSG00000240950
ribosomal protein L8 (RPL8) pseudogene
3.0349
0.0000
10
ENSG00000199786
RNA5SP188
RNA, 5S ribosomal pseudogene 188
3.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000230173
LINC01790
long intergenic non-protein coding RNA 1790
-2.5850
0.5915
63127
ENSG00000229562
ZFYVE9P1
zinc finger FYVE-type containing 9 pseudogene 1
-2.5850
0.2253
63126
ENSG00000228836
CT45A5
cancer/testis antigen family 45 member A5
-2.5850
0.0089
63125
ENSG00000228687
pseudogene similar to a hypothetical protein (FLJ10996)
-2.5850
0.5915
63124
ENSG00000227336
LINC00434
long intergenic non-protein coding RNA 434
-2.5850
0.0379
63123
ENSG00000214434
NIFKP1
nucleolar protein interacting with the FHA domain of MKI67 pseudogene 1
-2.5850
0.2253
63122
ENSG00000213526
SETP8
SET pseudogene 8
-2.5850
0.5915
63121
ENSG00000205456
TP53TG3D
TP53 target 3D
-2.5850
0.0001
63120
ENSG00000201065
RNU6-461P
RNA, U6 small nuclear 461, pseudogene
-2.5850
0.5915
63119
ENSG00000196427
NBPF4
NBPF member 4
-2.5850
0.2253
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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