Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773752

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773752 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M379	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000200151	RN7SKP231	RN7SK pseudogene 231	3.5850	0.0000
2	ENSG00000257807		starch binding domain 1 (STBD1) pseudogene	3.5850	0.0000
3	ENSG00000258877	ATP5F1AP4	ATP synthase F1 subunit alpha pseudogene 4	3.5850	0.0000
4	ENSG00000172209	GPR22	G protein-coupled receptor 22	3.3219	0.0000
5	ENSG00000248362		novel transcript	3.3219	0.0000
6	ENSG00000251320		novel transcript	3.3219	0.0000
7	ENSG00000258225		novel transcript, antisense to NAV3	3.3219	0.0000
8	ENSG00000242781	LINC02050	long intergenic non-protein coding RNA 2050	3.1699	0.0000
9	ENSG00000240950		ribosomal protein L8 (RPL8) pseudogene	3.0349	0.0000
10	ENSG00000199786	RNA5SP188	RNA, 5S ribosomal pseudogene 188	3.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000230173	LINC01790	long intergenic non-protein coding RNA 1790	-2.5850	0.5915
63127	ENSG00000229562	ZFYVE9P1	zinc finger FYVE-type containing 9 pseudogene 1	-2.5850	0.2253
63126	ENSG00000228836	CT45A5	cancer/testis antigen family 45 member A5	-2.5850	0.0089
63125	ENSG00000228687		pseudogene similar to a hypothetical protein (FLJ10996)	-2.5850	0.5915
63124	ENSG00000227336	LINC00434	long intergenic non-protein coding RNA 434	-2.5850	0.0379
63123	ENSG00000214434	NIFKP1	nucleolar protein interacting with the FHA domain of MKI67 pseudogene 1	-2.5850	0.2253
63122	ENSG00000213526	SETP8	SET pseudogene 8	-2.5850	0.5915
63121	ENSG00000205456	TP53TG3D	TP53 target 3D	-2.5850	0.0001
63120	ENSG00000201065	RNU6-461P	RNA, U6 small nuclear 461, pseudogene	-2.5850	0.5915
63119	ENSG00000196427	NBPF4	NBPF member 4	-2.5850	0.2253

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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