SHOGoiN Cell Methylome: GSM2773752

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773752


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M379Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200151 RN7SKP231 RN7SK pseudogene 231 3.5850 0.0000
2 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 3.5850 0.0000
3 ENSG00000258877 ATP5F1AP4 ATP synthase F1 subunit alpha pseudogene 4 3.5850 0.0000
4 ENSG00000172209 GPR22 G protein-coupled receptor 22 3.3219 0.0000
5 ENSG00000248362 novel transcript 3.3219 0.0000
6 ENSG00000251320 novel transcript 3.3219 0.0000
7 ENSG00000258225 novel transcript, antisense to NAV3 3.3219 0.0000
8 ENSG00000242781 LINC02050 long intergenic non-protein coding RNA 2050 3.1699 0.0000
9 ENSG00000240950 ribosomal protein L8 (RPL8) pseudogene 3.0349 0.0000
10 ENSG00000199786 RNA5SP188 RNA, 5S ribosomal pseudogene 188 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000272543 MIR4787 microRNA 4787 -2.6656 0.0000
63340 ENSG00000127990 SGCE sarcoglycan epsilon -2.6647 0.0000
63339 ENSG00000214702 COMM domain containing 4 (COMMD4) pseudogene -2.6646 0.0000
63338 ENSG00000182183 SHISAL2A shisa like 2A -2.6642 0.0000
63337 ENSG00000272031 ANKRD34A ankyrin repeat domain 34A -2.6641 0.0000
63336 ENSG00000253955 novel transcript -2.6639 0.0000
63335 ENSG00000256948 novel transcript -2.6620 0.0000
63334 ENSG00000250662 HNRNPKP5 heterogeneous nuclear ribonucleoprotein K pseudogene 5 -2.6618 0.0000
63333 ENSG00000237267 LINC01519 long intergenic non-protein coding RNA 1519 -2.6610 0.1399
63332 ENSG00000229236 TTTY10 testis-specific transcript, Y-linked 10 -2.6610 0.2361

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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