Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773753

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773753 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M380	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000075624	ACTB	actin beta	4.9981	0.0000
2	ENSG00000245667		novel transcript	4.4087	0.0000
3	ENSG00000269968		novel transcript, antisense to GAPDH	4.4087	0.0000
4	ENSG00000184140	OR4F6	olfactory receptor family 4 subfamily F member 6	4.0000	0.0000
5	ENSG00000261303		Golgin subfamily A pseudogene	3.9375	0.0000
6	ENSG00000268830	BNIP3P32	BCL2 interacting protein 3 pseudogene 32	3.9069	0.0002
7	ENSG00000170421	KRT8	keratin 8	3.8551	0.0000
8	ENSG00000197721	CR1L	complement C3b/C4b receptor 1 like	3.8074	0.0000
9	ENSG00000244703	CD46P1	CD46 molecule pseudogene 1	3.8074	0.0000
10	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	3.7418	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000116030	SUMO1	small ubiquitin like modifier 1	-2.0000	0.0000
63127	ENSG00000112234	FBXL4	F-box and leucine rich repeat protein 4	-2.0000	0.0106
63126	ENSG00000105640	RPL18A	ribosomal protein L18a	-2.0000	0.0106
63125	ENSG00000104883	PEX11G	peroxisomal biogenesis factor 11 gamma	-2.0000	0.1030
63124	ENSG00000100697	DICER1	dicer 1, ribonuclease III	-2.0000	0.0000
63123	ENSG00000091704	CPA1	carboxypeptidase A1	-2.0000	0.0106
63122	ENSG00000089127	OAS1	2'-5'-oligoadenylate synthetase 1	-2.0000	0.1030
63121	ENSG00000084453	SLCO1A2	solute carrier organic anion transporter family member 1A2	-2.0000	0.1030
63120	ENSG00000204335	SP5	Sp5 transcription factor	-1.9970	0.0000
63119	ENSG00000278921	EPB41L4A-DT	EPB41L4A divergent transcript	-1.9957	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...