Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773753
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773753
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M380
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000075624
ACTB
actin beta
4.9981
0.0000
2
ENSG00000245667
novel transcript
4.4087
0.0000
3
ENSG00000269968
novel transcript, antisense to GAPDH
4.4087
0.0000
4
ENSG00000184140
OR4F6
olfactory receptor family 4 subfamily F member 6
4.0000
0.0000
5
ENSG00000261303
Golgin subfamily A pseudogene
3.9375
0.0000
6
ENSG00000268830
BNIP3P32
BCL2 interacting protein 3 pseudogene 32
3.9069
0.0002
7
ENSG00000170421
KRT8
keratin 8
3.8551
0.0000
8
ENSG00000197721
CR1L
complement C3b/C4b receptor 1 like
3.8074
0.0000
9
ENSG00000244703
CD46P1
CD46 molecule pseudogene 1
3.8074
0.0000
10
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
3.7418
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000116030
SUMO1
small ubiquitin like modifier 1
-2.0000
0.0000
63127
ENSG00000112234
FBXL4
F-box and leucine rich repeat protein 4
-2.0000
0.0106
63126
ENSG00000105640
RPL18A
ribosomal protein L18a
-2.0000
0.0106
63125
ENSG00000104883
PEX11G
peroxisomal biogenesis factor 11 gamma
-2.0000
0.1030
63124
ENSG00000100697
DICER1
dicer 1, ribonuclease III
-2.0000
0.0000
63123
ENSG00000091704
CPA1
carboxypeptidase A1
-2.0000
0.0106
63122
ENSG00000089127
OAS1
2'-5'-oligoadenylate synthetase 1
-2.0000
0.1030
63121
ENSG00000084453
SLCO1A2
solute carrier organic anion transporter family member 1A2
-2.0000
0.1030
63120
ENSG00000204335
SP5
Sp5 transcription factor
-1.9970
0.0000
63119
ENSG00000278921
EPB41L4A-DT
EPB41L4A divergent transcript
-1.9957
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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