Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773753

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773753


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M380Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000075624 ACTB actin beta 4.9981 0.0000
2 ENSG00000245667 novel transcript 4.4087 0.0000
3 ENSG00000269968 novel transcript, antisense to GAPDH 4.4087 0.0000
4 ENSG00000184140 OR4F6 olfactory receptor family 4 subfamily F member 6 4.0000 0.0000
5 ENSG00000261303 Golgin subfamily A pseudogene 3.9375 0.0000
6 ENSG00000268830 BNIP3P32 BCL2 interacting protein 3 pseudogene 32 3.9069 0.0002
7 ENSG00000170421 KRT8 keratin 8 3.8551 0.0000
8 ENSG00000197721 CR1L complement C3b/C4b receptor 1 like 3.8074 0.0000
9 ENSG00000244703 CD46P1 CD46 molecule pseudogene 1 3.8074 0.0000
10 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 3.7418 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000116030 SUMO1 small ubiquitin like modifier 1 -2.0000 0.0000
63127 ENSG00000112234 FBXL4 F-box and leucine rich repeat protein 4 -2.0000 0.0106
63126 ENSG00000105640 RPL18A ribosomal protein L18a -2.0000 0.0106
63125 ENSG00000104883 PEX11G peroxisomal biogenesis factor 11 gamma -2.0000 0.1030
63124 ENSG00000100697 DICER1 dicer 1, ribonuclease III -2.0000 0.0000
63123 ENSG00000091704 CPA1 carboxypeptidase A1 -2.0000 0.0106
63122 ENSG00000089127 OAS1 2'-5'-oligoadenylate synthetase 1 -2.0000 0.1030
63121 ENSG00000084453 SLCO1A2 solute carrier organic anion transporter family member 1A2 -2.0000 0.1030
63120 ENSG00000204335 SP5 Sp5 transcription factor -1.9970 0.0000
63119 ENSG00000278921 EPB41L4A-DT EPB41L4A divergent transcript -1.9957 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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