SHOGoiN Cell Methylome: GSM2773753
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773753 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M380 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000075624 | ACTB | actin beta | 4.9981 | 0.0000 |
| 2 | ENSG00000245667 | novel transcript | 4.4087 | 0.0000 | |
| 3 | ENSG00000269968 | novel transcript, antisense to GAPDH | 4.4087 | 0.0000 | |
| 4 | ENSG00000184140 | OR4F6 | olfactory receptor family 4 subfamily F member 6 | 4.0000 | 0.0000 |
| 5 | ENSG00000261303 | Golgin subfamily A pseudogene | 3.9375 | 0.0000 | |
| 6 | ENSG00000268830 | BNIP3P32 | BCL2 interacting protein 3 pseudogene 32 | 3.9069 | 0.0002 |
| 7 | ENSG00000170421 | KRT8 | keratin 8 | 3.8551 | 0.0000 |
| 8 | ENSG00000197721 | CR1L | complement C3b/C4b receptor 1 like | 3.8074 | 0.0000 |
| 9 | ENSG00000244703 | CD46P1 | CD46 molecule pseudogene 1 | 3.8074 | 0.0000 |
| 10 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 3.7418 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000186815 | TPCN1 | two pore segment channel 1 | -2.1248 | 0.0000 |
| 63340 | ENSG00000232546 | pseudogene similar to part of general transcription factor II, i (GTF2I) | -2.1246 | 0.0000 | |
| 63339 | ENSG00000199940 | RN7SKP75 | RN7SK pseudogene 75 | -2.1242 | 0.0000 |
| 63338 | ENSG00000276225 | NA | -2.1156 | 0.0000 | |
| 63337 | ENSG00000152782 | PANK1 | pantothenate kinase 1 | -2.1073 | 0.0000 |
| 63336 | ENSG00000252714 | RNA5SP392 | RNA, 5S ribosomal pseudogene 392 | -2.1022 | 0.0000 |
| 63335 | ENSG00000255295 | histone cluster 3, H3 (HIST3H3) pseudogene | -2.1021 | 0.0000 | |
| 63334 | ENSG00000252013 | RNU4ATAC14P | RNA, U4atac small nuclear 14, pseudogene | -2.1016 | 0.0000 |
| 63333 | ENSG00000234741 | GAS5 | growth arrest specific 5 | -2.1012 | 0.0000 |
| 63332 | ENSG00000185278 | ZBTB37 | zinc finger and BTB domain containing 37 | -2.1012 | 0.0000 |
