SHOGoiN Cell Methylome: GSM2773753

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773753


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M380Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000075624 ACTB actin beta 4.9981 0.0000
2 ENSG00000245667 novel transcript 4.4087 0.0000
3 ENSG00000269968 novel transcript, antisense to GAPDH 4.4087 0.0000
4 ENSG00000184140 OR4F6 olfactory receptor family 4 subfamily F member 6 4.0000 0.0000
5 ENSG00000261303 Golgin subfamily A pseudogene 3.9375 0.0000
6 ENSG00000268830 BNIP3P32 BCL2 interacting protein 3 pseudogene 32 3.9069 0.0002
7 ENSG00000170421 KRT8 keratin 8 3.8551 0.0000
8 ENSG00000197721 CR1L complement C3b/C4b receptor 1 like 3.8074 0.0000
9 ENSG00000244703 CD46P1 CD46 molecule pseudogene 1 3.8074 0.0000
10 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 3.7418 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000186815 TPCN1 two pore segment channel 1 -2.1248 0.0000
63340 ENSG00000232546 pseudogene similar to part of general transcription factor II, i (GTF2I) -2.1246 0.0000
63339 ENSG00000199940 RN7SKP75 RN7SK pseudogene 75 -2.1242 0.0000
63338 ENSG00000276225 NA -2.1156 0.0000
63337 ENSG00000152782 PANK1 pantothenate kinase 1 -2.1073 0.0000
63336 ENSG00000252714 RNA5SP392 RNA, 5S ribosomal pseudogene 392 -2.1022 0.0000
63335 ENSG00000255295 histone cluster 3, H3 (HIST3H3) pseudogene -2.1021 0.0000
63334 ENSG00000252013 RNU4ATAC14P RNA, U4atac small nuclear 14, pseudogene -2.1016 0.0000
63333 ENSG00000234741 GAS5 growth arrest specific 5 -2.1012 0.0000
63332 ENSG00000185278 ZBTB37 zinc finger and BTB domain containing 37 -2.1012 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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