Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773754

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773754


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M381Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000075624 ACTB actin beta 4.0198 0.0000
2 ENSG00000229105 ASTN2-AS1 ASTN2 antisense RNA 1 3.8774 0.0000
3 ENSG00000207281 Y RNA 3.8074 0.0000
4 ENSG00000143493 INTS7 integrator complex subunit 7 3.7842 0.0000
5 ENSG00000200879 SNORD14E small nucleolar RNA, C/D box 14E 3.6962 0.0000
6 ENSG00000166796 LDHC lactate dehydrogenase C 3.6387 0.0000
7 ENSG00000072201 LNX1 ligand of numb-protein X 1 3.5850 0.0000
8 ENSG00000257025 novel transcript 3.5850 0.0000
9 ENSG00000205755 CRLF2 cytokine receptor like factor 2 3.5799 0.0000
10 ENSG00000258751 novel transcript 3.5711 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000089250 NOS1 nitric oxide synthase 1 -1.5850 0.2348
63127 ENSG00000075420 FNDC3B fibronectin type III domain containing 3B -1.5850 1.0000
63126 ENSG00000066117 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 -1.5850 0.2348
63125 ENSG00000058668 ATP2B4 ATPase plasma membrane Ca2+ transporting 4 -1.5850 1.0000
63124 ENSG00000051620 HEBP2 heme binding protein 2 -1.5850 0.0642
63123 ENSG00000049245 VAMP3 vesicle associated membrane protein 3 -1.5850 0.0955
63122 ENSG00000009780 FAM76A family with sequence similarity 76 member A -1.5850 1.0000
63121 ENSG00000204301 NOTCH4 notch receptor 4 -1.5841 0.0010
63120 ENSG00000224307 novel transcript -1.5805 0.3730
63119 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -1.5765 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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