SHOGoiN Cell Methylome: GSM2773755

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773755


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M382Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 5.4279 0.0000
2 ENSG00000170421 KRT8 keratin 8 4.7116 0.0000
3 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 4.6782 0.0000
4 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 4.6751 0.0000
5 ENSG00000111057 KRT18 keratin 18 4.5448 0.0000
6 ENSG00000245667 novel transcript 4.4658 0.0000
7 ENSG00000232573 RPL3P4 ribosomal protein L3 pseudogene 4 4.4425 0.0000
8 ENSG00000234648 pseudogene similar to part of ribosomal protein L3 (RPL3) 4.4425 0.0000
9 ENSG00000207642 MIR571 microRNA 571 4.3923 0.0000
10 ENSG00000250321 pseudogene similar to part of ribosomal protein S17 (RPS17) 4.3923 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000232260 BTF3L4P1 basic transcription factor 3 like 4 pseudogene 1 -2.0807 0.0000
63340 ENSG00000166006 KCNC2 potassium voltage-gated channel subfamily C member 2 -2.0785 0.0000
63339 ENSG00000068831 RASGRP2 RAS guanyl releasing protein 2 -2.0773 0.0000
63338 ENSG00000108679 LGALS3BP galectin 3 binding protein -2.0766 0.0000
63337 ENSG00000284370 MIR4640 microRNA 4640 -2.0762 0.0000
63336 ENSG00000274625 NA -2.0745 0.0000
63335 ENSG00000222630 RN7SKP131 RN7SK pseudogene 131 -2.0745 0.0000
63334 ENSG00000169220 RGS14 regulator of G protein signaling 14 -2.0741 0.0000
63333 ENSG00000265883 Up-regulated during skeletal muscle growth protein 5 (USMG5) pseudogene -2.0731 0.0000
63332 ENSG00000111319 SCNN1A sodium channel epithelial 1 alpha subunit -2.0730 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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