Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773755

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773755


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M382Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 5.4279 0.0000
2 ENSG00000170421 KRT8 keratin 8 4.7116 0.0000
3 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 4.6782 0.0000
4 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 4.6751 0.0000
5 ENSG00000111057 KRT18 keratin 18 4.5448 0.0000
6 ENSG00000245667 novel transcript 4.4658 0.0000
7 ENSG00000232573 RPL3P4 ribosomal protein L3 pseudogene 4 4.4425 0.0000
8 ENSG00000234648 pseudogene similar to part of ribosomal protein L3 (RPL3) 4.4425 0.0000
9 ENSG00000207642 MIR571 microRNA 571 4.3923 0.0000
10 ENSG00000250321 pseudogene similar to part of ribosomal protein S17 (RPS17) 4.3923 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000227447 XGY1 XG pseudogene, Y-linked 1 -1.8935 0.0000
63127 ENSG00000035862 TIMP2 TIMP metallopeptidase inhibitor 2 -1.8922 0.0000
63126 ENSG00000235198 novel transcript -1.8914 0.0000
63125 ENSG00000224950 novel transcript -1.8813 0.0000
63124 ENSG00000250053 RARRES2P4 retinoic acid receptor responder 2 pseudogene 4 -1.8812 0.0000
63123 ENSG00000214273 AGGF1P1 angiogenic factor with G-patch and FHA domains 1 pseudogene 1 -1.8812 0.0000
63122 ENSG00000090975 PITPNM2 phosphatidylinositol transfer protein membrane associated 2 -1.8804 0.0000
63121 ENSG00000279193 novel transcript -1.8756 0.0000
63120 ENSG00000123594 ATXN3L ataxin 3 like -1.8755 0.0000
63119 ENSG00000181789 COPG1 COPI coat complex subunit gamma 1 -1.8668 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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