Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773756

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773756


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M383Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 3.5834 0.0000
2 ENSG00000284135 MIR3654 microRNA 3654 3.3627 0.0000
3 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 3.2152 0.0000
4 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.6227 0.0000
5 ENSG00000202283 NA 2.3219 0.0010
6 ENSG00000184492 FOXD4L1 forkhead box D4 like 1 2.0000 0.0056
7 ENSG00000253776 novel transcript 2.0000 0.0056
8 ENSG00000276156 ribonuclease P/MRP 40kDa subunit (RPP40) pseudogene 2.0000 0.0000
9 ENSG00000240792 novel transcript 1.9914 0.0000
10 ENSG00000218426 60S ribosomal protein L27a (RPL27A) pseudogene 1.9826 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000115507 OTX1 orthodenticle homeobox 1 -1.9819 0.0000
63127 ENSG00000238358 novel transcript -1.9816 0.0000
63126 ENSG00000232028 novel transcript -1.9813 0.0000
63125 ENSG00000277268 LHX1-DT LHX1 divergent transcript -1.9812 0.0000
63124 ENSG00000227268 KLLN killin, p53 regulated DNA replication inhibitor -1.9810 0.0000
63123 ENSG00000267336 EIF4A2P1 eukaryotic translation initiation factor 4A2 pseudogene 1 -1.9808 0.0000
63122 ENSG00000172478 MAB21L4 mab-21 like 4 -1.9802 0.0000
63121 ENSG00000267295 double C2-like domains, beta (DOC2B) pseudogene -1.9802 0.0000
63120 ENSG00000183837 PNMA3 PNMA family member 3 -1.9796 0.0000
63119 ENSG00000101558 VAPA VAMP associated protein A -1.9795 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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