SHOGoiN Cell Methylome: GSM2773756

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773756


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M383Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 3.5834 0.0000
2 ENSG00000284135 MIR3654 microRNA 3654 3.3627 0.0000
3 ENSG00000228519 RAN binding protein 1 pseudogene 3.2152 0.0000
4 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.6227 0.0000
5 ENSG00000202283 NA 2.3219 0.0010
6 ENSG00000184492 FOXD4L1 forkhead box D4 like 1 2.0000 0.0056
7 ENSG00000253776 novel transcript 2.0000 0.0056
8 ENSG00000276156 ribonuclease P/MRP 40kDa subunit (RPP40) pseudogene 2.0000 0.0000
9 ENSG00000240792 novel transcript 1.9914 0.0000
10 ENSG00000218426 60S ribosomal protein L27a (RPL27A) pseudogene 1.9826 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000166971 AKTIP AKT interacting protein -2.0246 0.0000
63340 ENSG00000150594 ADRA2A adrenoceptor alpha 2A -2.0245 0.0000
63339 ENSG00000266962 novel transcript, antisense to HSD17B1 -2.0244 0.0000
63338 ENSG00000129625 REEP5 receptor accessory protein 5 -2.0241 0.0000
63337 ENSG00000254270 ERHP1 ERH pseudogene 1 -2.0231 0.0000
63336 ENSG00000185347 TEDC1 tubulin epsilon and delta complex 1 -2.0228 0.0000
63335 ENSG00000156052 GNAQ G protein subunit alpha q -2.0228 0.0000
63334 ENSG00000214336 FOXI3 forkhead box I3 -2.0226 0.0000
63333 ENSG00000079689 SCGN secretagogin, EF-hand calcium binding protein -2.0220 0.0000
63332 ENSG00000261793 novel transcript, TMEM210 and LRRC26 readthrough -2.0219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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