SHOGoiN Cell Methylome: GSM2773757

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773757


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M384Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235605 ribosomal protein S15 (RPS15) pseudogene 3.4560 0.0000
2 ENSG00000238041 chromosome 20 open reading frame 30 (C20orf30) pseudogene 3.1699 0.0000
3 ENSG00000228519 RAN binding protein 1 pseudogene 3.0346 0.0000
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 3.0227 0.0000
5 ENSG00000251051 ELL2P2 elongation factor for RNA polymerase II 2 pseudogene 2 3.0000 0.0000
6 ENSG00000227657 SERPINA7P1 serpin family A member 7 pseudogene 1 2.8074 0.0000
7 ENSG00000248613 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 2.8074 0.0000
8 ENSG00000258708 SLC25A21-AS1 SLC25A21 antisense RNA 1 2.7549 0.0000
9 ENSG00000218426 60S ribosomal protein L27a (RPL27A) pseudogene 2.6964 0.0000
10 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 2.6227 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000271009 novel transcript -2.3779 0.0000
63340 ENSG00000258735 LINC00637 long intergenic non-protein coding RNA 637 -2.3777 0.0000
63339 ENSG00000259813 novel transcript, antisense to RNF166 -2.3775 0.0000
63338 ENSG00000125872 LRRN4 leucine rich repeat neuronal 4 -2.3775 0.0000
63337 ENSG00000175414 ARL10 ADP ribosylation factor like GTPase 10 -2.3768 0.0000
63336 ENSG00000260913 LINC01254 long intergenic non-protein coding RNA 1254 -2.3766 0.0000
63335 ENSG00000278048 NA -2.3764 0.0000
63333 ENSG00000103355 PRSS33 serine protease 33 -2.3761 0.0000
63332 ENSG00000149451 ADAM33 ADAM metallopeptidase domain 33 -2.3759 0.0000
10 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 2.6227 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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