Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773757

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773757


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M384Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235605 ribosomal protein S15 (RPS15) pseudogene 3.4560 0.0000
2 ENSG00000238041 TMEM230P2 TMEM230 pseudogene 2 3.1699 0.0000
3 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 3.0346 0.0000
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 3.0227 0.0000
5 ENSG00000251051 ELL2P2 elongation factor for RNA polymerase II 2 pseudogene 2 3.0000 0.0000
6 ENSG00000227657 SERPINA7P1 serpin family A member 7 pseudogene 1 2.8074 0.0000
7 ENSG00000248613 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 2.8074 0.0000
8 ENSG00000258708 SLC25A21-AS1 SLC25A21 antisense RNA 1 2.7549 0.0000
9 ENSG00000218426 60S ribosomal protein L27a (RPL27A) pseudogene 2.6964 0.0000
10 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 2.6227 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000283317 novel transcript -2.3145 0.0000
63127 ENSG00000206168 novel pseudogene -2.3140 0.0000
63126 ENSG00000260658 novel transcript -2.3128 0.0000
63125 ENSG00000213212 NCLP1 nucleolin pseudogene 1 -2.3127 0.0000
63124 ENSG00000267735 novel transcript, antisense to DNASE2 -2.3122 0.0000
63123 ENSG00000209582 SNORA48 small nucleolar RNA, H/ACA box 48 -2.3121 0.0000
63122 ENSG00000156469 MTERF3 mitochondrial transcription termination factor 3 -2.3116 0.0000
63121 ENSG00000283568 5.8S ribosomal RNA -2.3107 0.0000
63120 ENSG00000177283 FZD8 frizzled class receptor 8 -2.3088 0.0000
63119 ENSG00000237594 novel transcript, antisense to TIAM1 -2.3085 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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