Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773757
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773757
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M384
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000235605
ribosomal protein S15 (RPS15) pseudogene
3.4560
0.0000
2
ENSG00000238041
TMEM230P2
TMEM230 pseudogene 2
3.1699
0.0000
3
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
3.0346
0.0000
4
ENSG00000249353
NPM1P27
nucleophosmin 1 pseudogene 27
3.0227
0.0000
5
ENSG00000251051
ELL2P2
elongation factor for RNA polymerase II 2 pseudogene 2
3.0000
0.0000
6
ENSG00000227657
SERPINA7P1
serpin family A member 7 pseudogene 1
2.8074
0.0000
7
ENSG00000248613
pseudogene similar to part of UDP glucuronosyltransferase 2 family protein
2.8074
0.0000
8
ENSG00000258708
SLC25A21-AS1
SLC25A21 antisense RNA 1
2.7549
0.0000
9
ENSG00000218426
60S ribosomal protein L27a (RPL27A) pseudogene
2.6964
0.0000
10
ENSG00000234782
TPT1P9
tumor protein, translationally-controlled 1 pseudogene 9
2.6227
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000283317
novel transcript
-2.3145
0.0000
63127
ENSG00000206168
novel pseudogene
-2.3140
0.0000
63126
ENSG00000260658
novel transcript
-2.3128
0.0000
63125
ENSG00000213212
NCLP1
nucleolin pseudogene 1
-2.3127
0.0000
63124
ENSG00000267735
novel transcript, antisense to DNASE2
-2.3122
0.0000
63123
ENSG00000209582
SNORA48
small nucleolar RNA, H/ACA box 48
-2.3121
0.0000
63122
ENSG00000156469
MTERF3
mitochondrial transcription termination factor 3
-2.3116
0.0000
63121
ENSG00000283568
5.8S ribosomal RNA
-2.3107
0.0000
63120
ENSG00000177283
FZD8
frizzled class receptor 8
-2.3088
0.0000
63119
ENSG00000237594
novel transcript, antisense to TIAM1
-2.3085
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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