SHOGoiN Cell Methylome: GSM2773757
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773757 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M384 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000235605 | ribosomal protein S15 (RPS15) pseudogene | 3.4560 | 0.0000 | |
| 2 | ENSG00000238041 | chromosome 20 open reading frame 30 (C20orf30) pseudogene | 3.1699 | 0.0000 | |
| 3 | ENSG00000228519 | RAN binding protein 1 pseudogene | 3.0346 | 0.0000 | |
| 4 | ENSG00000249353 | NPM1P27 | nucleophosmin 1 pseudogene 27 | 3.0227 | 0.0000 |
| 5 | ENSG00000251051 | ELL2P2 | elongation factor for RNA polymerase II 2 pseudogene 2 | 3.0000 | 0.0000 |
| 6 | ENSG00000227657 | SERPINA7P1 | serpin family A member 7 pseudogene 1 | 2.8074 | 0.0000 |
| 7 | ENSG00000248613 | pseudogene similar to part of UDP glucuronosyltransferase 2 family protein | 2.8074 | 0.0000 | |
| 8 | ENSG00000258708 | SLC25A21-AS1 | SLC25A21 antisense RNA 1 | 2.7549 | 0.0000 |
| 9 | ENSG00000218426 | 60S ribosomal protein L27a (RPL27A) pseudogene | 2.6964 | 0.0000 | |
| 10 | ENSG00000234782 | TPT1P9 | tumor protein, translationally-controlled 1 pseudogene 9 | 2.6227 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000271009 | novel transcript | -2.3779 | 0.0000 | |
| 63340 | ENSG00000258735 | LINC00637 | long intergenic non-protein coding RNA 637 | -2.3777 | 0.0000 |
| 63339 | ENSG00000259813 | novel transcript, antisense to RNF166 | -2.3775 | 0.0000 | |
| 63338 | ENSG00000125872 | LRRN4 | leucine rich repeat neuronal 4 | -2.3775 | 0.0000 |
| 63337 | ENSG00000175414 | ARL10 | ADP ribosylation factor like GTPase 10 | -2.3768 | 0.0000 |
| 63336 | ENSG00000260913 | LINC01254 | long intergenic non-protein coding RNA 1254 | -2.3766 | 0.0000 |
| 63335 | ENSG00000278048 | NA | -2.3764 | 0.0000 | |
| 63333 | ENSG00000103355 | PRSS33 | serine protease 33 | -2.3761 | 0.0000 |
| 63332 | ENSG00000149451 | ADAM33 | ADAM metallopeptidase domain 33 | -2.3759 | 0.0000 |
| 10 | ENSG00000234782 | TPT1P9 | tumor protein, translationally-controlled 1 pseudogene 9 | 2.6227 | 0.0000 |
