Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773757

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773757 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M384	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000235605		ribosomal protein S15 (RPS15) pseudogene	3.4560	0.0000
2	ENSG00000238041	TMEM230P2	TMEM230 pseudogene 2	3.1699	0.0000
3	ENSG00000228519	RANBP1P1	RANBP1 pseudogene 1	3.0346	0.0000
4	ENSG00000249353	NPM1P27	nucleophosmin 1 pseudogene 27	3.0227	0.0000
5	ENSG00000251051	ELL2P2	elongation factor for RNA polymerase II 2 pseudogene 2	3.0000	0.0000
6	ENSG00000227657	SERPINA7P1	serpin family A member 7 pseudogene 1	2.8074	0.0000
7	ENSG00000248613		pseudogene similar to part of UDP glucuronosyltransferase 2 family protein	2.8074	0.0000
8	ENSG00000258708	SLC25A21-AS1	SLC25A21 antisense RNA 1	2.7549	0.0000
9	ENSG00000218426		60S ribosomal protein L27a (RPL27A) pseudogene	2.6964	0.0000
10	ENSG00000234782	TPT1P9	tumor protein, translationally-controlled 1 pseudogene 9	2.6227	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000283317		novel transcript	-2.3145	0.0000
63127	ENSG00000206168		novel pseudogene	-2.3140	0.0000
63126	ENSG00000260658		novel transcript	-2.3128	0.0000
63125	ENSG00000213212	NCLP1	nucleolin pseudogene 1	-2.3127	0.0000
63124	ENSG00000267735		novel transcript, antisense to DNASE2	-2.3122	0.0000
63123	ENSG00000209582	SNORA48	small nucleolar RNA, H/ACA box 48	-2.3121	0.0000
63122	ENSG00000156469	MTERF3	mitochondrial transcription termination factor 3	-2.3116	0.0000
63121	ENSG00000283568		5.8S ribosomal RNA	-2.3107	0.0000
63120	ENSG00000177283	FZD8	frizzled class receptor 8	-2.3088	0.0000
63119	ENSG00000237594		novel transcript, antisense to TIAM1	-2.3085	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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