Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773758
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773758
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M385
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000214064
RPL6P5
ribosomal protein L6 pseudogene 5
3.3219
0.0000
2
ENSG00000270665
HNRNPA1P67
heterogeneous nuclear ribonucleoprotein A1 pseudogene 67
3.1699
0.0000
3
ENSG00000271172
novel transcript
3.1699
0.0000
4
ENSG00000251585
ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene
3.0000
0.0000
5
ENSG00000261635
tropomyosin 3 (TPM3) pseudogene
3.0000
0.0000
6
ENSG00000270308
TEX101P1
TEX101 pseudogene 1
3.0000
0.0000
7
ENSG00000278011
novel transcript
2.9886
0.0000
8
ENSG00000207325
RNY1P4
RNY1 pseudogene 4
2.8074
0.0000
9
ENSG00000240974
RPS27AP10
RPS27A pseudogene 10
2.6855
0.0000
10
ENSG00000207289
RNU6-1235P
RNA, U6 small nuclear 1235, pseudogene
2.6610
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000272702
novel transcript
-2.3561
0.0000
63127
ENSG00000214870
novel transcript
-2.3559
0.0000
63126
ENSG00000281039
novel protein
-2.3554
0.0000
63125
ENSG00000263683
novel transcript
-2.3554
0.0000
63124
ENSG00000278722
novel transcript, antisense to PCDH17
-2.3544
0.0000
63123
ENSG00000162367
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor
-2.3542
0.0000
63122
ENSG00000163251
FZD5
frizzled class receptor 5
-2.3537
0.0000
63121
ENSG00000154146
NRGN
neurogranin
-2.3535
0.0000
63120
ENSG00000188263
IL17REL
interleukin 17 receptor E like
-2.3534
0.0000
63119
ENSG00000231588
SHQ1P1
SHQ1, H/ACA ribonucleoprotein assembly factor pseudogene 1
-2.3533
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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