SHOGoiN Cell Methylome: GSM2773758

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773758


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M385Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214064 RPL6P5 ribosomal protein L6 pseudogene 5 3.3219 0.0000
2 ENSG00000270665 HNRNPA1P67 heterogeneous nuclear ribonucleoprotein A1 pseudogene 67 3.1699 0.0000
3 ENSG00000271172 novel transcript 3.1699 0.0000
4 ENSG00000251585 ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene 3.0000 0.0000
5 ENSG00000261635 tropomyosin 3 (TPM3) pseudogene 3.0000 0.0000
6 ENSG00000270308 testis expressed 101 (TEX101) pseudogene 3.0000 0.0000
7 ENSG00000278011 novel transcript 2.9886 0.0000
8 ENSG00000207325 RNY1P4 RNY1 pseudogene 4 2.8074 0.0000
9 ENSG00000240974 RPS27AP10 ribosomal protein S27a pseudogene 10 2.6855 0.0000
10 ENSG00000207289 RNU6-1235P RNA, U6 small nuclear 1235, pseudogene 2.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000176435 CLEC14A C-type lectin domain containing 14A -2.4444 0.0000
63340 ENSG00000276223 novel transcript, sense intronic to KCNK15 -2.4437 0.0000
63338 ENSG00000130433 CACNG6 calcium voltage-gated channel auxiliary subunit gamma 6 -2.4426 0.0000
63337 ENSG00000257319 novel transcript, antisense to DBX2 -2.4423 0.0000
63336 ENSG00000213820 RPL13P2 ribosomal protein L13 pseudogene 2 -2.4406 0.0000
63335 ENSG00000183979 NPB neuropeptide B -2.4388 0.0000
63334 ENSG00000204919 PRR20A proline rich 20A -2.4387 0.0009
63333 ENSG00000171522 PTGER4 prostaglandin E receptor 4 -2.4375 0.0000
63332 ENSG00000166707 ZCCHC18 zinc finger CCHC-type containing 18 -2.4357 0.0000
10 ENSG00000207289 RNU6-1235P RNA, U6 small nuclear 1235, pseudogene 2.6610 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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