Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773758

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773758 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M385	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000214064	RPL6P5	ribosomal protein L6 pseudogene 5	3.3219	0.0000
2	ENSG00000270665	HNRNPA1P67	heterogeneous nuclear ribonucleoprotein A1 pseudogene 67	3.1699	0.0000
3	ENSG00000271172		novel transcript	3.1699	0.0000
4	ENSG00000251585		ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene	3.0000	0.0000
5	ENSG00000261635		tropomyosin 3 (TPM3) pseudogene	3.0000	0.0000
6	ENSG00000270308	TEX101P1	TEX101 pseudogene 1	3.0000	0.0000
7	ENSG00000278011		novel transcript	2.9886	0.0000
8	ENSG00000207325	RNY1P4	RNY1 pseudogene 4	2.8074	0.0000
9	ENSG00000240974	RPS27AP10	RPS27A pseudogene 10	2.6855	0.0000
10	ENSG00000207289	RNU6-1235P	RNA, U6 small nuclear 1235, pseudogene	2.6610	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000272702		novel transcript	-2.3561	0.0000
63127	ENSG00000214870		novel transcript	-2.3559	0.0000
63126	ENSG00000281039		novel protein	-2.3554	0.0000
63125	ENSG00000263683		novel transcript	-2.3554	0.0000
63124	ENSG00000278722		novel transcript, antisense to PCDH17	-2.3544	0.0000
63123	ENSG00000162367	TAL1	TAL bHLH transcription factor 1, erythroid differentiation factor	-2.3542	0.0000
63122	ENSG00000163251	FZD5	frizzled class receptor 5	-2.3537	0.0000
63121	ENSG00000154146	NRGN	neurogranin	-2.3535	0.0000
63120	ENSG00000188263	IL17REL	interleukin 17 receptor E like	-2.3534	0.0000
63119	ENSG00000231588	SHQ1P1	SHQ1, H/ACA ribonucleoprotein assembly factor pseudogene 1	-2.3533	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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