SHOGoiN Cell Methylome: GSM2773758
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773758 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M385 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000214064 | RPL6P5 | ribosomal protein L6 pseudogene 5 | 3.3219 | 0.0000 |
| 2 | ENSG00000270665 | HNRNPA1P67 | heterogeneous nuclear ribonucleoprotein A1 pseudogene 67 | 3.1699 | 0.0000 |
| 3 | ENSG00000271172 | novel transcript | 3.1699 | 0.0000 | |
| 4 | ENSG00000251585 | ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene | 3.0000 | 0.0000 | |
| 5 | ENSG00000261635 | tropomyosin 3 (TPM3) pseudogene | 3.0000 | 0.0000 | |
| 6 | ENSG00000270308 | testis expressed 101 (TEX101) pseudogene | 3.0000 | 0.0000 | |
| 7 | ENSG00000278011 | novel transcript | 2.9886 | 0.0000 | |
| 8 | ENSG00000207325 | RNY1P4 | RNY1 pseudogene 4 | 2.8074 | 0.0000 |
| 9 | ENSG00000240974 | RPS27AP10 | ribosomal protein S27a pseudogene 10 | 2.6855 | 0.0000 |
| 10 | ENSG00000207289 | RNU6-1235P | RNA, U6 small nuclear 1235, pseudogene | 2.6610 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000176435 | CLEC14A | C-type lectin domain containing 14A | -2.4444 | 0.0000 |
| 63340 | ENSG00000276223 | novel transcript, sense intronic to KCNK15 | -2.4437 | 0.0000 | |
| 63338 | ENSG00000130433 | CACNG6 | calcium voltage-gated channel auxiliary subunit gamma 6 | -2.4426 | 0.0000 |
| 63337 | ENSG00000257319 | novel transcript, antisense to DBX2 | -2.4423 | 0.0000 | |
| 63336 | ENSG00000213820 | RPL13P2 | ribosomal protein L13 pseudogene 2 | -2.4406 | 0.0000 |
| 63335 | ENSG00000183979 | NPB | neuropeptide B | -2.4388 | 0.0000 |
| 63334 | ENSG00000204919 | PRR20A | proline rich 20A | -2.4387 | 0.0009 |
| 63333 | ENSG00000171522 | PTGER4 | prostaglandin E receptor 4 | -2.4375 | 0.0000 |
| 63332 | ENSG00000166707 | ZCCHC18 | zinc finger CCHC-type containing 18 | -2.4357 | 0.0000 |
| 10 | ENSG00000207289 | RNU6-1235P | RNA, U6 small nuclear 1235, pseudogene | 2.6610 | 0.0000 |
