Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773758

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773758


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M385Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214064 RPL6P5 ribosomal protein L6 pseudogene 5 3.3219 0.0000
2 ENSG00000270665 HNRNPA1P67 heterogeneous nuclear ribonucleoprotein A1 pseudogene 67 3.1699 0.0000
3 ENSG00000271172 novel transcript 3.1699 0.0000
4 ENSG00000251585 ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene 3.0000 0.0000
5 ENSG00000261635 tropomyosin 3 (TPM3) pseudogene 3.0000 0.0000
6 ENSG00000270308 TEX101P1 TEX101 pseudogene 1 3.0000 0.0000
7 ENSG00000278011 novel transcript 2.9886 0.0000
8 ENSG00000207325 RNY1P4 RNY1 pseudogene 4 2.8074 0.0000
9 ENSG00000240974 RPS27AP10 RPS27A pseudogene 10 2.6855 0.0000
10 ENSG00000207289 RNU6-1235P RNA, U6 small nuclear 1235, pseudogene 2.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000272702 novel transcript -2.3561 0.0000
63127 ENSG00000214870 novel transcript -2.3559 0.0000
63126 ENSG00000281039 novel protein -2.3554 0.0000
63125 ENSG00000263683 novel transcript -2.3554 0.0000
63124 ENSG00000278722 novel transcript, antisense to PCDH17 -2.3544 0.0000
63123 ENSG00000162367 TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor -2.3542 0.0000
63122 ENSG00000163251 FZD5 frizzled class receptor 5 -2.3537 0.0000
63121 ENSG00000154146 NRGN neurogranin -2.3535 0.0000
63120 ENSG00000188263 IL17REL interleukin 17 receptor E like -2.3534 0.0000
63119 ENSG00000231588 SHQ1P1 SHQ1, H/ACA ribonucleoprotein assembly factor pseudogene 1 -2.3533 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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