SHOGoiN Cell Methylome: GSM2773759

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773759


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M386Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257864 IQ motif containing F1 (IQCF1) pseudogene 3.1699 0.0000
2 ENSG00000251127 novel transcript 3.0000 0.0000
3 ENSG00000278580 piggyBac transposable element derived 4 (PGBD4) pseudogene 2.8074 0.0000
4 ENSG00000260838 novel transcript 2.6230 0.0000
5 ENSG00000207632 MIR588 microRNA 588 2.5850 0.0001
6 ENSG00000242009 novel transcript 2.5850 0.0001
7 ENSG00000280185 tec 2.5850 0.0000
8 ENSG00000262384 proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene 2.5411 0.0000
9 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.4986 0.0000
10 ENSG00000136546 SCN7A sodium voltage-gated channel alpha subunit 7 2.4581 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000282898 novel transcript -2.2925 0.6108
63340 ENSG00000235011 novel transcript -2.2925 0.6108
63339 ENSG00000204814 novel transcript -2.2925 0.6108
63338 ENSG00000273492 novel transcript -2.2921 0.0000
63337 ENSG00000231095 GYG1P3 glycogenin 1 pseudogene 3 -2.2918 0.0000
63336 ENSG00000274954 novel transcript -2.2917 0.0000
63335 ENSG00000134627 PIWIL4 piwi like RNA-mediated gene silencing 4 -2.2915 0.0000
63334 ENSG00000249122 novel transcript -2.2914 0.0000
63333 ENSG00000267355 RPL9P29 ribosomal protein L9 pseudogene 29 -2.2907 0.0000
63332 ENSG00000135047 CTSL cathepsin L -2.2901 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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