Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773759

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773759


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M386Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257864 IQ motif containing F1 (IQCF1) pseudogene 3.1699 0.0000
2 ENSG00000251127 novel transcript 3.0000 0.0000
3 ENSG00000278580 piggyBac transposable element derived 4 (PGBD4) pseudogene 2.8074 0.0000
4 ENSG00000260838 novel transcript 2.6230 0.0000
5 ENSG00000207632 MIR588 microRNA 588 2.5850 0.0001
6 ENSG00000242009 novel transcript 2.5850 0.0001
7 ENSG00000280185 tec 2.5850 0.0000
8 ENSG00000262384 proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene 2.5411 0.0000
9 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.4986 0.0000
10 ENSG00000136546 SCN7A sodium voltage-gated channel alpha subunit 7 2.4581 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000238326 NA -2.2255 0.0000
63127 ENSG00000121068 TBX2 T-box transcription factor 2 -2.2252 0.0000
63126 ENSG00000170745 KCNS3 potassium voltage-gated channel modifier subfamily S member 3 -2.2243 0.0000
63125 ENSG00000274286 ADRA2B adrenoceptor alpha 2B -2.2238 0.0000
63124 ENSG00000213091 PHBP1 prohibitin pseudogene 1 -2.2237 0.0000
63123 ENSG00000162367 TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor -2.2236 0.0000
63122 ENSG00000224592 MIR3659HG MIR3659 host gene -2.2227 0.0000
63121 ENSG00000154640 BTG3 BTG anti-proliferation factor 3 -2.2226 0.0000
63120 ENSG00000241745 RN7SL788P RNA, 7SL, cytoplasmic 788, pseudogene -2.2222 0.0000
63119 ENSG00000267778 CBARP-DT CBARP divergent transcript -2.2220 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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