SHOGoiN Cell Methylome: GSM2773760

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773760


Profile download
7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M387Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230173 LINC01790 long intergenic non-protein coding RNA 1790 2.8074 0.0000
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.5147 0.0000
3 ENSG00000241022 NIPA2P2 NIPA magnesium transporter 2 pseudogene 2 2.3219 0.0007
4 ENSG00000265484 novel transcript 2.3219 0.0000
5 ENSG00000276828 DnaJ (Hsp40) homolog, subfamily B, member 5 (DNAJB5) pseudogene 2.3219 0.0007
6 ENSG00000177151 OR2T35 olfactory receptor family 2 subfamily T member 35 2.3208 0.0000
7 ENSG00000272375 novel transcript 2.2288 0.0000
8 ENSG00000278989 novel transcript 2.1872 0.0000
9 ENSG00000226798 putatitive novel transcript 2.1128 0.0000
10 ENSG00000230614 DYNLL1P7 dynein light chain LC8-type 1 pseudogene 7 2.0113 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000201588 RNA5S2 RNA, 5S ribosomal 2 -2.3830 0.0000
63340 ENSG00000200381 RNA5S4 RNA, 5S ribosomal 4 -2.3830 0.0000
63339 ENSG00000199337 RNA5S3 RNA, 5S ribosomal 3 -2.3830 0.0000
63338 ENSG00000130224 LRCH2 leucine rich repeats and calponin homology domain containing 2 -2.3830 0.0000
63337 ENSG00000112078 KCTD20 potassium channel tetramerization domain containing 20 -2.3824 0.0000
63336 ENSG00000116990 MYCL MYCL proto-oncogene, bHLH transcription factor -2.3815 0.0000
63335 ENSG00000262296 novel transcript, antisense to USP43 -2.3810 0.0000
63334 ENSG00000227200 novel transcript -2.3810 0.0000
63333 ENSG00000263731 novel transcript -2.3808 0.0000
63332 ENSG00000270149 novel transcript, TSTD1 - F11R readthrough -2.3808 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...