Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773760

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773760


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M387Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230173 LINC01790 long intergenic non-protein coding RNA 1790 2.8074 0.0000
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.5147 0.0000
3 ENSG00000241022 NIPA2P2 NIPA2 pseudogene 2 2.3219 0.0007
4 ENSG00000265484 novel transcript 2.3219 0.0000
5 ENSG00000276828 DnaJ (Hsp40) homolog, subfamily B, member 5 (DNAJB5) pseudogene 2.3219 0.0007
6 ENSG00000177151 OR2T35 olfactory receptor family 2 subfamily T member 35 2.3208 0.0000
7 ENSG00000272375 novel transcript 2.2288 0.0000
8 ENSG00000278989 novel transcript 2.1872 0.0000
9 ENSG00000226798 putatitive novel transcript 2.1128 0.0000
10 ENSG00000230614 DYNLL1P7 dynein light chain LC8-type 1 pseudogene 7 2.0113 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000219863 RPL31P28 ribosomal protein L31 pseudogene 28 -2.3137 0.0000
63127 ENSG00000185697 MYBL1 MYB proto-oncogene like 1 -2.3127 0.0000
63126 ENSG00000275180 novel transcript -2.3127 0.0000
63125 ENSG00000008300 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 -2.3126 0.0000
63124 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -2.3122 0.0000
63123 ENSG00000196911 KPNA5 karyopherin subunit alpha 5 -2.3119 0.0000
63122 ENSG00000140015 KCNH5 potassium voltage-gated channel subfamily H member 5 -2.3117 0.0000
63121 ENSG00000276965 NA -2.3116 0.0000
63120 ENSG00000275307 NA -2.3116 0.0000
63119 ENSG00000272202 novel transcript, antisense to ARHGEF3 -2.3110 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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