Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773761

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773761


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M388Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257042 novel transcript, antisense to PTHLH 2.8074 0.0000
2 ENSG00000222357 RNU2-20P RNA, U2 small nuclear 20, pseudogene 2.3219 0.0000
3 ENSG00000222741 RNA5SP229 RNA, 5S ribosomal pseudogene 229 2.3219 0.0002
4 ENSG00000231300 EZH2P1 enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 2.3219 0.0002
5 ENSG00000248262 novel transcript 2.3219 0.0000
6 ENSG00000252073 RNU6-947P RNA, U6 small nuclear 947, pseudogene 2.3219 0.0000
7 ENSG00000261129 novel transcript 2.3219 0.0002
8 ENSG00000273900 novel pseudogene 2.3219 0.0002
9 ENSG00000223842 novel transcript 2.2925 0.0000
10 ENSG00000185962 LCE3A late cornified envelope 3A 2.0000 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000229213 microtubule-actin crosslinking factor 1 (MACF1) pseudogene -1.8394 0.0000
63127 ENSG00000234817 ECI2-DT ECI2 divergent transcript -1.8389 0.0000
63126 ENSG00000105643 ARRDC2 arrestin domain containing 2 -1.8386 0.0000
63125 ENSG00000181029 TRAPPC5 trafficking protein particle complex 5 -1.8386 0.0000
63124 ENSG00000168769 TET2 tet methylcytosine dioxygenase 2 -1.8382 0.0000
63123 ENSG00000261314 novel transcript, sense overlapping SLC30A1 -1.8380 0.0000
63122 ENSG00000230821 ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene -1.8379 0.0001
63121 ENSG00000178996 SNX18 sorting nexin 18 -1.8379 0.0048
63120 ENSG00000263892 MIR4667 microRNA 4667 -1.8378 0.0000
63119 ENSG00000172538 FAM170B family with sequence similarity 170 member B -1.8376 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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