SHOGoiN Cell Methylome: GSM2773761
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773761 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M388 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000257042 | novel transcript, antisense to PTHLH | 2.8074 | 0.0000 | |
| 2 | ENSG00000222357 | RNU2-20P | RNA, U2 small nuclear 20, pseudogene | 2.3219 | 0.0000 |
| 3 | ENSG00000222741 | RNA5SP229 | RNA, 5S ribosomal pseudogene 229 | 2.3219 | 0.0002 |
| 4 | ENSG00000231300 | EZH2P1 | enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 | 2.3219 | 0.0002 |
| 5 | ENSG00000248262 | novel transcript | 2.3219 | 0.0000 | |
| 6 | ENSG00000252073 | RNU6-947P | RNA, U6 small nuclear 947, pseudogene | 2.3219 | 0.0000 |
| 7 | ENSG00000261129 | novel transcript | 2.3219 | 0.0002 | |
| 8 | ENSG00000273900 | novel pseudogene | 2.3219 | 0.0002 | |
| 9 | ENSG00000223842 | novel transcript | 2.2925 | 0.0000 | |
| 10 | ENSG00000185962 | LCE3A | late cornified envelope 3A | 2.0000 | 0.0014 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000275588 | RN7SL341P | RNA, 7SL, cytoplasmic 341, pseudogene | -1.9024 | 0.2474 |
| 63340 | ENSG00000230157 | ATP5MC1P1 | ATP synthase membrane subunit c locus 1 pseudogene 1 | -1.9016 | 0.0000 |
| 63339 | ENSG00000275778 | PRH1-PRR4 readthrough | -1.9004 | 0.0000 | |
| 63338 | ENSG00000271367 | novel transcript | -1.9001 | 0.0000 | |
| 63337 | ENSG00000164532 | TBX20 | T-box 20 | -1.8994 | 0.0000 |
| 63336 | ENSG00000119973 | PRLHR | prolactin releasing hormone receptor | -1.8994 | 0.0000 |
| 63335 | ENSG00000181004 | BBS12 | Bardet-Biedl syndrome 12 | -1.8986 | 0.0004 |
| 63334 | ENSG00000274642 | phosphodiesterase 4D interacting protein (PDE4DIP) pseudogene | -1.8984 | 0.0189 | |
| 63333 | ENSG00000240713 | RN7SL860P | RNA, 7SL, cytoplasmic 860, pseudogene | -1.8982 | 0.0016 |
| 63332 | ENSG00000267677 | novel transcript | -1.8976 | 0.0000 |
