SHOGoiN Cell Methylome: GSM2773761

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773761


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M388Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257042 novel transcript, antisense to PTHLH 2.8074 0.0000
2 ENSG00000222357 RNU2-20P RNA, U2 small nuclear 20, pseudogene 2.3219 0.0000
3 ENSG00000222741 RNA5SP229 RNA, 5S ribosomal pseudogene 229 2.3219 0.0002
4 ENSG00000231300 EZH2P1 enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 2.3219 0.0002
5 ENSG00000248262 novel transcript 2.3219 0.0000
6 ENSG00000252073 RNU6-947P RNA, U6 small nuclear 947, pseudogene 2.3219 0.0000
7 ENSG00000261129 novel transcript 2.3219 0.0002
8 ENSG00000273900 novel pseudogene 2.3219 0.0002
9 ENSG00000223842 novel transcript 2.2925 0.0000
10 ENSG00000185962 LCE3A late cornified envelope 3A 2.0000 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000275588 RN7SL341P RNA, 7SL, cytoplasmic 341, pseudogene -1.9024 0.2474
63340 ENSG00000230157 ATP5MC1P1 ATP synthase membrane subunit c locus 1 pseudogene 1 -1.9016 0.0000
63339 ENSG00000275778 PRH1-PRR4 readthrough -1.9004 0.0000
63338 ENSG00000271367 novel transcript -1.9001 0.0000
63337 ENSG00000164532 TBX20 T-box 20 -1.8994 0.0000
63336 ENSG00000119973 PRLHR prolactin releasing hormone receptor -1.8994 0.0000
63335 ENSG00000181004 BBS12 Bardet-Biedl syndrome 12 -1.8986 0.0004
63334 ENSG00000274642 phosphodiesterase 4D interacting protein (PDE4DIP) pseudogene -1.8984 0.0189
63333 ENSG00000240713 RN7SL860P RNA, 7SL, cytoplasmic 860, pseudogene -1.8982 0.0016
63332 ENSG00000267677 novel transcript -1.8976 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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