Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773761
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773761
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M388
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000257042
novel transcript, antisense to PTHLH
2.8074
0.0000
2
ENSG00000222357
RNU2-20P
RNA, U2 small nuclear 20, pseudogene
2.3219
0.0000
3
ENSG00000222741
RNA5SP229
RNA, 5S ribosomal pseudogene 229
2.3219
0.0002
4
ENSG00000231300
EZH2P1
enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1
2.3219
0.0002
5
ENSG00000248262
novel transcript
2.3219
0.0000
6
ENSG00000252073
RNU6-947P
RNA, U6 small nuclear 947, pseudogene
2.3219
0.0000
7
ENSG00000261129
novel transcript
2.3219
0.0002
8
ENSG00000273900
novel pseudogene
2.3219
0.0002
9
ENSG00000223842
novel transcript
2.2925
0.0000
10
ENSG00000185962
LCE3A
late cornified envelope 3A
2.0000
0.0014
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000229213
microtubule-actin crosslinking factor 1 (MACF1) pseudogene
-1.8394
0.0000
63127
ENSG00000234817
ECI2-DT
ECI2 divergent transcript
-1.8389
0.0000
63126
ENSG00000105643
ARRDC2
arrestin domain containing 2
-1.8386
0.0000
63125
ENSG00000181029
TRAPPC5
trafficking protein particle complex 5
-1.8386
0.0000
63124
ENSG00000168769
TET2
tet methylcytosine dioxygenase 2
-1.8382
0.0000
63123
ENSG00000261314
novel transcript, sense overlapping SLC30A1
-1.8380
0.0000
63122
ENSG00000230821
ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene
-1.8379
0.0001
63121
ENSG00000178996
SNX18
sorting nexin 18
-1.8379
0.0048
63120
ENSG00000263892
MIR4667
microRNA 4667
-1.8378
0.0000
63119
ENSG00000172538
FAM170B
family with sequence similarity 170 member B
-1.8376
0.0001
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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