Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773761

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773761 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M388	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000257042		novel transcript, antisense to PTHLH	2.8074	0.0000
2	ENSG00000222357	RNU2-20P	RNA, U2 small nuclear 20, pseudogene	2.3219	0.0000
3	ENSG00000222741	RNA5SP229	RNA, 5S ribosomal pseudogene 229	2.3219	0.0002
4	ENSG00000231300	EZH2P1	enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1	2.3219	0.0002
5	ENSG00000248262		novel transcript	2.3219	0.0000
6	ENSG00000252073	RNU6-947P	RNA, U6 small nuclear 947, pseudogene	2.3219	0.0000
7	ENSG00000261129		novel transcript	2.3219	0.0002
8	ENSG00000273900		novel pseudogene	2.3219	0.0002
9	ENSG00000223842		novel transcript	2.2925	0.0000
10	ENSG00000185962	LCE3A	late cornified envelope 3A	2.0000	0.0014

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000229213		microtubule-actin crosslinking factor 1 (MACF1) pseudogene	-1.8394	0.0000
63127	ENSG00000234817	ECI2-DT	ECI2 divergent transcript	-1.8389	0.0000
63126	ENSG00000105643	ARRDC2	arrestin domain containing 2	-1.8386	0.0000
63125	ENSG00000181029	TRAPPC5	trafficking protein particle complex 5	-1.8386	0.0000
63124	ENSG00000168769	TET2	tet methylcytosine dioxygenase 2	-1.8382	0.0000
63123	ENSG00000261314		novel transcript, sense overlapping SLC30A1	-1.8380	0.0000
63122	ENSG00000230821		ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene	-1.8379	0.0001
63121	ENSG00000178996	SNX18	sorting nexin 18	-1.8379	0.0048
63120	ENSG00000263892	MIR4667	microRNA 4667	-1.8378	0.0000
63119	ENSG00000172538	FAM170B	family with sequence similarity 170 member B	-1.8376	0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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