Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773762

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773762


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M389Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231158 PTP4A1P1 PTP4A1 pseudogene 1 3.1699 0.0000
2 ENSG00000261581 HERC2P11 hect domain and RLD 2 pseudogene 11 3.1699 0.0000
3 ENSG00000213787 RPL7AP38 ribosomal protein L7a pseudogene 38 3.0000 0.0000
4 ENSG00000248528 LINC02058 long intergenic non-protein coding RNA 2058 3.0000 0.0000
5 ENSG00000273176 novel transcript, antisense to TOM1 2.8774 0.0000
6 ENSG00000215482 CALM2P3 calmodulin 2 pseudogene 3 2.5850 0.0000
7 ENSG00000235256 FKBP4P7 FKBP prolyl isomerase 4 pseudogene 7 2.5850 0.0000
8 ENSG00000235275 KRT18P16 keratin 18 pseudogene 16 2.5850 0.0000
9 ENSG00000254049 NRG1-IT3 NRG1 intronic transcript 3 2.5850 0.0000
10 ENSG00000258506 ribosomal protein L13a (RPL13A) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000259377 novel transcript, intronic to TMOD2 -2.2486 0.0009
63127 ENSG00000254402 LRRC24 leucine rich repeat containing 24 -2.2481 0.0000
63126 ENSG00000227542 novel transcript -2.2471 0.0000
63125 ENSG00000177606 JUN Jun proto-oncogene, AP-1 transcription factor subunit -2.2462 0.0000
63124 ENSG00000260253 novel transcript, overlapping to DUSP4 -2.2462 0.0000
63123 ENSG00000263613 novel transcript, antisense to PIPOX -2.2457 0.0000
63122 ENSG00000189227 C15orf61 chromosome 15 open reading frame 61 -2.2451 0.0000
63121 ENSG00000224628 CDK5 regulatory subunit associated protein 3 (CDK5RAP3) pseudogene -2.2443 0.0172
63120 ENSG00000113946 CLDN16 claudin 16 -2.2440 0.0000
63119 ENSG00000088538 DOCK3 dedicator of cytokinesis 3 -2.2421 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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