Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773762

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773762 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M389	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000231158	PTP4A1P1	PTP4A1 pseudogene 1	3.1699	0.0000
2	ENSG00000261581	HERC2P11	hect domain and RLD 2 pseudogene 11	3.1699	0.0000
3	ENSG00000213787	RPL7AP38	ribosomal protein L7a pseudogene 38	3.0000	0.0000
4	ENSG00000248528	LINC02058	long intergenic non-protein coding RNA 2058	3.0000	0.0000
5	ENSG00000273176		novel transcript, antisense to TOM1	2.8774	0.0000
6	ENSG00000215482	CALM2P3	calmodulin 2 pseudogene 3	2.5850	0.0000
7	ENSG00000235256	FKBP4P7	FKBP prolyl isomerase 4 pseudogene 7	2.5850	0.0000
8	ENSG00000235275	KRT18P16	keratin 18 pseudogene 16	2.5850	0.0000
9	ENSG00000254049	NRG1-IT3	NRG1 intronic transcript 3	2.5850	0.0000
10	ENSG00000258506		ribosomal protein L13a (RPL13A) pseudogene	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000259377		novel transcript, intronic to TMOD2	-2.2486	0.0009
63127	ENSG00000254402	LRRC24	leucine rich repeat containing 24	-2.2481	0.0000
63126	ENSG00000227542		novel transcript	-2.2471	0.0000
63125	ENSG00000177606	JUN	Jun proto-oncogene, AP-1 transcription factor subunit	-2.2462	0.0000
63124	ENSG00000260253		novel transcript, overlapping to DUSP4	-2.2462	0.0000
63123	ENSG00000263613		novel transcript, antisense to PIPOX	-2.2457	0.0000
63122	ENSG00000189227	C15orf61	chromosome 15 open reading frame 61	-2.2451	0.0000
63121	ENSG00000224628		CDK5 regulatory subunit associated protein 3 (CDK5RAP3) pseudogene	-2.2443	0.0172
63120	ENSG00000113946	CLDN16	claudin 16	-2.2440	0.0000
63119	ENSG00000088538	DOCK3	dedicator of cytokinesis 3	-2.2421	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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