Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773762
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773762
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M389
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000231158
PTP4A1P1
PTP4A1 pseudogene 1
3.1699
0.0000
2
ENSG00000261581
HERC2P11
hect domain and RLD 2 pseudogene 11
3.1699
0.0000
3
ENSG00000213787
RPL7AP38
ribosomal protein L7a pseudogene 38
3.0000
0.0000
4
ENSG00000248528
LINC02058
long intergenic non-protein coding RNA 2058
3.0000
0.0000
5
ENSG00000273176
novel transcript, antisense to TOM1
2.8774
0.0000
6
ENSG00000215482
CALM2P3
calmodulin 2 pseudogene 3
2.5850
0.0000
7
ENSG00000235256
FKBP4P7
FKBP prolyl isomerase 4 pseudogene 7
2.5850
0.0000
8
ENSG00000235275
KRT18P16
keratin 18 pseudogene 16
2.5850
0.0000
9
ENSG00000254049
NRG1-IT3
NRG1 intronic transcript 3
2.5850
0.0000
10
ENSG00000258506
ribosomal protein L13a (RPL13A) pseudogene
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000259377
novel transcript, intronic to TMOD2
-2.2486
0.0009
63127
ENSG00000254402
LRRC24
leucine rich repeat containing 24
-2.2481
0.0000
63126
ENSG00000227542
novel transcript
-2.2471
0.0000
63125
ENSG00000177606
JUN
Jun proto-oncogene, AP-1 transcription factor subunit
-2.2462
0.0000
63124
ENSG00000260253
novel transcript, overlapping to DUSP4
-2.2462
0.0000
63123
ENSG00000263613
novel transcript, antisense to PIPOX
-2.2457
0.0000
63122
ENSG00000189227
C15orf61
chromosome 15 open reading frame 61
-2.2451
0.0000
63121
ENSG00000224628
CDK5 regulatory subunit associated protein 3 (CDK5RAP3) pseudogene
-2.2443
0.0172
63120
ENSG00000113946
CLDN16
claudin 16
-2.2440
0.0000
63119
ENSG00000088538
DOCK3
dedicator of cytokinesis 3
-2.2421
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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