SHOGoiN Cell Methylome: GSM2773762
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773762 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M389 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000231158 | PTP4A1P1 | PTP4A1 pseudogene 1 | 3.1699 | 0.0000 |
| 2 | ENSG00000261581 | HERC2P11 | hect domain and RLD 2 pseudogene 11 | 3.1699 | 0.0000 |
| 3 | ENSG00000213787 | RPL7AP38 | ribosomal protein L7a pseudogene 38 | 3.0000 | 0.0000 |
| 4 | ENSG00000248528 | LINC02058 | long intergenic non-protein coding RNA 2058 | 3.0000 | 0.0000 |
| 5 | ENSG00000273176 | novel transcript, antisense to TOM1 | 2.8774 | 0.0000 | |
| 6 | ENSG00000215482 | CALM2P3 | calmodulin 2 pseudogene 3 | 2.5850 | 0.0000 |
| 7 | ENSG00000235256 | FKBP4P7 | FKBP prolyl isomerase 4 pseudogene 7 | 2.5850 | 0.0000 |
| 8 | ENSG00000235275 | KRT18P16 | keratin 18 pseudogene 16 | 2.5850 | 0.0000 |
| 9 | ENSG00000254049 | NRG1-IT3 | NRG1 intronic transcript 3 | 2.5850 | 0.0000 |
| 10 | ENSG00000258506 | ribosomal protein L13a (RPL13A) pseudogene | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000261248 | novel transcript | -2.3219 | 0.0984 | |
| 63340 | ENSG00000260268 | LINC00919 | long intergenic non-protein coding RNA 919 | -2.3219 | 0.6081 |
| 63339 | ENSG00000258887 | dehydrogenase/reductase (SDR family) member 4 (DHRS4) pseudogene | -2.3219 | 0.6081 | |
| 63338 | ENSG00000258494 | OR11J5P | olfactory receptor family 11 subfamily J member 5 pseudogene | -2.3219 | 0.3874 |
| 63337 | ENSG00000257527 | microRNA 3179-3 | -2.3219 | 0.0004 | |
| 63336 | ENSG00000254801 | establishment of cohesion 1 homolog 1 (S. cerevisiae) (ESCO1) pseudogene | -2.3219 | 0.2553 | |
| 63335 | ENSG00000254080 | novel transcript | -2.3219 | 0.6081 | |
| 63334 | ENSG00000252397 | RNU5A-4P | RNA, U5A small nuclear 4, pseudogene | -2.3219 | 1.0000 |
| 63333 | ENSG00000251805 | NA | -2.3219 | 1.0000 | |
| 63332 | ENSG00000250847 | Rho GTPase activating protein 5 (ARHGAP5) pseudogene | -2.3219 | 1.0000 |
