SHOGoiN Cell Methylome: GSM2773762

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773762


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M389Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231158 PTP4A1P1 PTP4A1 pseudogene 1 3.1699 0.0000
2 ENSG00000261581 HERC2P11 hect domain and RLD 2 pseudogene 11 3.1699 0.0000
3 ENSG00000213787 RPL7AP38 ribosomal protein L7a pseudogene 38 3.0000 0.0000
4 ENSG00000248528 LINC02058 long intergenic non-protein coding RNA 2058 3.0000 0.0000
5 ENSG00000273176 novel transcript, antisense to TOM1 2.8774 0.0000
6 ENSG00000215482 CALM2P3 calmodulin 2 pseudogene 3 2.5850 0.0000
7 ENSG00000235256 FKBP4P7 FKBP prolyl isomerase 4 pseudogene 7 2.5850 0.0000
8 ENSG00000235275 KRT18P16 keratin 18 pseudogene 16 2.5850 0.0000
9 ENSG00000254049 NRG1-IT3 NRG1 intronic transcript 3 2.5850 0.0000
10 ENSG00000258506 ribosomal protein L13a (RPL13A) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000261248 novel transcript -2.3219 0.0984
63340 ENSG00000260268 LINC00919 long intergenic non-protein coding RNA 919 -2.3219 0.6081
63339 ENSG00000258887 dehydrogenase/reductase (SDR family) member 4 (DHRS4) pseudogene -2.3219 0.6081
63338 ENSG00000258494 OR11J5P olfactory receptor family 11 subfamily J member 5 pseudogene -2.3219 0.3874
63337 ENSG00000257527 microRNA 3179-3 -2.3219 0.0004
63336 ENSG00000254801 establishment of cohesion 1 homolog 1 (S. cerevisiae) (ESCO1) pseudogene -2.3219 0.2553
63335 ENSG00000254080 novel transcript -2.3219 0.6081
63334 ENSG00000252397 RNU5A-4P RNA, U5A small nuclear 4, pseudogene -2.3219 1.0000
63333 ENSG00000251805 NA -2.3219 1.0000
63332 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene -2.3219 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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