Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773763

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773763 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M390	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000241103	RPL35AP11	ribosomal protein L35a pseudogene 11	3.0566	0.0000
2	ENSG00000235812	ADAM21P1	ADAM metallopeptidase domain 21 pseudogene 1	3.0000	0.0005
3	ENSG00000244717	RPS27P14	ribosomal protein S27 pseudogene 14	3.0000	0.0000
4	ENSG00000206924	RNU6-689P	RNA, U6 small nuclear 689, pseudogene	2.8074	0.0014
5	ENSG00000217160	MTCO2P31	MT-CO2 pseudogene 31	2.8074	0.0014
6	ENSG00000250500		eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa (EIF2S3) pseudogene	2.8074	0.0000
7	ENSG00000252535	RNA5SP254	RNA, 5S ribosomal pseudogene 254	2.8074	0.0014
8	ENSG00000259769		ADAM metallopeptidase domain 22 (ADAM22) pseudogene	2.8074	0.0014
9	ENSG00000275197		novel transcript, antisense to KRAS	2.8074	0.0000
10	ENSG00000279376		tec	2.8074	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000165650	PDZD8	PDZ domain containing 8	-1.6333	0.0000
63127	ENSG00000284237	LINC02767	long intergenic non-protein coding RNA 2767	-1.6333	0.0000
63126	ENSG00000176170	SPHK1	sphingosine kinase 1	-1.6332	0.0000
63125	ENSG00000165617	DACT1	dishevelled binding antagonist of beta catenin 1	-1.6330	0.0000
63124	ENSG00000246790		novel transcript, antisense to SORL1	-1.6328	0.0000
63123	ENSG00000136824	SMC2	structural maintenance of chromosomes 2	-1.6328	0.0000
63122	ENSG00000182798	MAGEB17	MAGE family member B17	-1.6327	0.0000
63121	ENSG00000188859	FAM78B	family with sequence similarity 78 member B	-1.6326	0.0000
63120	ENSG00000117528	ABCD3	ATP binding cassette subfamily D member 3	-1.6317	0.0000
63119	ENSG00000277437		NA	-1.6312	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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