SHOGoiN Cell Methylome: GSM2773763

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773763


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M390Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241103 ribosomal protein L35a (RPL35A) pseudogene 3.0566 0.0000
2 ENSG00000235812 ADAM21P1 ADAM metallopeptidase domain 21 pseudogene 1 3.0000 0.0005
3 ENSG00000244717 RPS27P14 ribosomal protein S27 pseudogene 14 3.0000 0.0000
4 ENSG00000206924 RNU6-689P RNA, U6 small nuclear 689, pseudogene 2.8074 0.0014
5 ENSG00000217160 MTCO2P31 MT-CO2 pseudogene 31 2.8074 0.0014
6 ENSG00000250500 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa (EIF2S3) pseudogene 2.8074 0.0000
7 ENSG00000252535 RNA5SP254 RNA, 5S ribosomal pseudogene 254 2.8074 0.0014
8 ENSG00000259769 ADAM metallopeptidase domain 22 (ADAM22) pseudogene 2.8074 0.0014
9 ENSG00000275197 novel transcript, antisense to KRAS 2.8074 0.0000
10 ENSG00000279376 tec 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000272398 CD24 CD24 molecule -1.7107 0.0000
63340 ENSG00000267541 MTCO2P2 MT-CO2 pseudogene 2 -1.7103 0.0000
63339 ENSG00000253806 novel transcript -1.7099 0.0000
63338 ENSG00000270846 chromosome 12 open reading frame 10 (C12orf10) pseudogene -1.7092 0.0000
63337 ENSG00000245293 novel transcript -1.7090 0.0000
63336 ENSG00000122859 NEUROG3 neurogenin 3 -1.7089 0.0000
63335 ENSG00000234361 novel transcript -1.7085 0.0000
63334 ENSG00000259977 novel transcript -1.7079 0.0000
63333 ENSG00000139329 LUM lumican -1.7078 0.0040
63332 ENSG00000258197 NKX2-2-AS1 NKX2-2 antisense RNA 1 -1.7078 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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