Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773763
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773763
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M390
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000241103
RPL35AP11
ribosomal protein L35a pseudogene 11
3.0566
0.0000
2
ENSG00000235812
ADAM21P1
ADAM metallopeptidase domain 21 pseudogene 1
3.0000
0.0005
3
ENSG00000244717
RPS27P14
ribosomal protein S27 pseudogene 14
3.0000
0.0000
4
ENSG00000206924
RNU6-689P
RNA, U6 small nuclear 689, pseudogene
2.8074
0.0014
5
ENSG00000217160
MTCO2P31
MT-CO2 pseudogene 31
2.8074
0.0014
6
ENSG00000250500
eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa (EIF2S3) pseudogene
2.8074
0.0000
7
ENSG00000252535
RNA5SP254
RNA, 5S ribosomal pseudogene 254
2.8074
0.0014
8
ENSG00000259769
ADAM metallopeptidase domain 22 (ADAM22) pseudogene
2.8074
0.0014
9
ENSG00000275197
novel transcript, antisense to KRAS
2.8074
0.0000
10
ENSG00000279376
tec
2.8074
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000165650
PDZD8
PDZ domain containing 8
-1.6333
0.0000
63127
ENSG00000284237
LINC02767
long intergenic non-protein coding RNA 2767
-1.6333
0.0000
63126
ENSG00000176170
SPHK1
sphingosine kinase 1
-1.6332
0.0000
63125
ENSG00000165617
DACT1
dishevelled binding antagonist of beta catenin 1
-1.6330
0.0000
63124
ENSG00000246790
novel transcript, antisense to SORL1
-1.6328
0.0000
63123
ENSG00000136824
SMC2
structural maintenance of chromosomes 2
-1.6328
0.0000
63122
ENSG00000182798
MAGEB17
MAGE family member B17
-1.6327
0.0000
63121
ENSG00000188859
FAM78B
family with sequence similarity 78 member B
-1.6326
0.0000
63120
ENSG00000117528
ABCD3
ATP binding cassette subfamily D member 3
-1.6317
0.0000
63119
ENSG00000277437
NA
-1.6312
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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