Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773763

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773763


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M390Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241103 RPL35AP11 ribosomal protein L35a pseudogene 11 3.0566 0.0000
2 ENSG00000235812 ADAM21P1 ADAM metallopeptidase domain 21 pseudogene 1 3.0000 0.0005
3 ENSG00000244717 RPS27P14 ribosomal protein S27 pseudogene 14 3.0000 0.0000
4 ENSG00000206924 RNU6-689P RNA, U6 small nuclear 689, pseudogene 2.8074 0.0014
5 ENSG00000217160 MTCO2P31 MT-CO2 pseudogene 31 2.8074 0.0014
6 ENSG00000250500 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa (EIF2S3) pseudogene 2.8074 0.0000
7 ENSG00000252535 RNA5SP254 RNA, 5S ribosomal pseudogene 254 2.8074 0.0014
8 ENSG00000259769 ADAM metallopeptidase domain 22 (ADAM22) pseudogene 2.8074 0.0014
9 ENSG00000275197 novel transcript, antisense to KRAS 2.8074 0.0000
10 ENSG00000279376 tec 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000165650 PDZD8 PDZ domain containing 8 -1.6333 0.0000
63127 ENSG00000284237 LINC02767 long intergenic non-protein coding RNA 2767 -1.6333 0.0000
63126 ENSG00000176170 SPHK1 sphingosine kinase 1 -1.6332 0.0000
63125 ENSG00000165617 DACT1 dishevelled binding antagonist of beta catenin 1 -1.6330 0.0000
63124 ENSG00000246790 novel transcript, antisense to SORL1 -1.6328 0.0000
63123 ENSG00000136824 SMC2 structural maintenance of chromosomes 2 -1.6328 0.0000
63122 ENSG00000182798 MAGEB17 MAGE family member B17 -1.6327 0.0000
63121 ENSG00000188859 FAM78B family with sequence similarity 78 member B -1.6326 0.0000
63120 ENSG00000117528 ABCD3 ATP binding cassette subfamily D member 3 -1.6317 0.0000
63119 ENSG00000277437 NA -1.6312 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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