SHOGoiN Cell Methylome: GSM2773763
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773763 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M390 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000241103 | ribosomal protein L35a (RPL35A) pseudogene | 3.0566 | 0.0000 | |
| 2 | ENSG00000235812 | ADAM21P1 | ADAM metallopeptidase domain 21 pseudogene 1 | 3.0000 | 0.0005 |
| 3 | ENSG00000244717 | RPS27P14 | ribosomal protein S27 pseudogene 14 | 3.0000 | 0.0000 |
| 4 | ENSG00000206924 | RNU6-689P | RNA, U6 small nuclear 689, pseudogene | 2.8074 | 0.0014 |
| 5 | ENSG00000217160 | MTCO2P31 | MT-CO2 pseudogene 31 | 2.8074 | 0.0014 |
| 6 | ENSG00000250500 | eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa (EIF2S3) pseudogene | 2.8074 | 0.0000 | |
| 7 | ENSG00000252535 | RNA5SP254 | RNA, 5S ribosomal pseudogene 254 | 2.8074 | 0.0014 |
| 8 | ENSG00000259769 | ADAM metallopeptidase domain 22 (ADAM22) pseudogene | 2.8074 | 0.0014 | |
| 9 | ENSG00000275197 | novel transcript, antisense to KRAS | 2.8074 | 0.0000 | |
| 10 | ENSG00000279376 | tec | 2.8074 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000272398 | CD24 | CD24 molecule | -1.7107 | 0.0000 |
| 63340 | ENSG00000267541 | MTCO2P2 | MT-CO2 pseudogene 2 | -1.7103 | 0.0000 |
| 63339 | ENSG00000253806 | novel transcript | -1.7099 | 0.0000 | |
| 63338 | ENSG00000270846 | chromosome 12 open reading frame 10 (C12orf10) pseudogene | -1.7092 | 0.0000 | |
| 63337 | ENSG00000245293 | novel transcript | -1.7090 | 0.0000 | |
| 63336 | ENSG00000122859 | NEUROG3 | neurogenin 3 | -1.7089 | 0.0000 |
| 63335 | ENSG00000234361 | novel transcript | -1.7085 | 0.0000 | |
| 63334 | ENSG00000259977 | novel transcript | -1.7079 | 0.0000 | |
| 63333 | ENSG00000139329 | LUM | lumican | -1.7078 | 0.0040 |
| 63332 | ENSG00000258197 | NKX2-2-AS1 | NKX2-2 antisense RNA 1 | -1.7078 | 0.0000 |
