Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773764

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773764


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M391Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230683 DDTP1 D-dopachrome tautomerase pseudogene 1 3.0000 0.0000
2 ENSG00000264246 chromosome 5 open reading frame 43 (C5orf43) pseudogene 2.9534 0.0000
3 ENSG00000186105 LRRC70 leucine rich repeat containing 70 2.8074 0.0000
4 ENSG00000235808 MYL6P2 MYL6 pseudogene 2 2.8074 0.0000
5 ENSG00000248346 novel transcript 2.8074 0.0000
6 ENSG00000251511 novel transcript 2.8074 0.0000
7 ENSG00000196772 OR14A16 olfactory receptor family 14 subfamily A member 16 2.5850 0.0000
8 ENSG00000213613 RPL11P3 ribosomal protein L11 pseudogene 3 2.5850 0.0000
9 ENSG00000221455 Small nucleolar RNA U3 2.5850 0.0000
10 ENSG00000235743 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000147138 GPR174 G protein-coupled receptor 174 -2.0000 0.2430
63127 ENSG00000144188 TRIM43CP tripartite motif containing 43C, pseudogene -2.0000 0.6142
63126 ENSG00000141200 KIF2B kinesin family member 2B -2.0000 1.0000
63125 ENSG00000133105 RXFP2 relaxin family peptide receptor 2 -2.0000 0.6142
63124 ENSG00000121318 TAS2R10 taste 2 receptor member 10 -2.0000 1.0000
63123 ENSG00000118922 KLF12 Kruppel like factor 12 -2.0000 0.1551
63122 ENSG00000171223 JUNB JunB proto-oncogene, AP-1 transcription factor subunit -1.9999 0.0000
63121 ENSG00000119782 FKBP1B FKBP prolyl isomerase 1B -1.9999 0.0000
63120 ENSG00000182944 EWSR1 EWS RNA binding protein 1 -1.9995 0.0000
63119 ENSG00000177045 SIX5 SIX homeobox 5 -1.9993 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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