SHOGoiN Cell Methylome: GSM2773764

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773764


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M391Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230683 DDTP1 D-dopachrome tautomerase pseudogene 1 3.0000 0.0000
2 ENSG00000264246 chromosome 5 open reading frame 43 (C5orf43) pseudogene 2.9534 0.0000
3 ENSG00000186105 LRRC70 leucine rich repeat containing 70 2.8074 0.0000
4 ENSG00000235808 MYL6P2 myosin light chain 6 pseudogene 2 2.8074 0.0000
5 ENSG00000248346 novel transcript 2.8074 0.0000
6 ENSG00000251511 novel transcript 2.8074 0.0000
7 ENSG00000196772 OR14A16 olfactory receptor family 14 subfamily A member 16 2.5850 0.0000
8 ENSG00000213613 RPL11P3 ribosomal protein L11 pseudogene 3 2.5850 0.0000
9 ENSG00000221455 NA 2.5850 0.0000
10 ENSG00000235743 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000278139 -PIK3R3 readthrough -2.0395 0.0000
63340 ENSG00000250719 P3R3URF PIK3R3 upstream reading frame -2.0395 0.0000
63339 ENSG00000267731 novel transcript -2.0395 0.0000
63338 ENSG00000213563 C8orf82 chromosome 8 open reading frame 82 -2.0393 0.0000
63337 ENSG00000237484 LINC01684 long intergenic non-protein coding RNA 1684 -2.0390 0.0588
63336 ENSG00000134595 SOX3 SRY-box 3 -2.0389 0.0000
63335 ENSG00000206975 RNU6-13P RNA, U6 small nuclear 13, pseudogene -2.0382 0.0266
63334 ENSG00000100024 UPB1 beta-ureidopropionase 1 -2.0370 0.0000
63333 ENSG00000183791 ELOA3 elongin A3 -2.0367 0.0000
63332 ENSG00000173769 TOPAZ1 testis and ovary specific PAZ domain containing 1 -2.0362 0.0046

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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