SHOGoiN Cell Methylome: GSM2773765
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773765 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M392 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000202398 | RNU6-61P | RNA, U6 small nuclear 61, pseudogene | 2.8074 | 0.0000 |
| 2 | ENSG00000230847 | OCLNP1 | OCLN pseudogene 1 | 2.5850 | 0.0001 |
| 3 | ENSG00000234269 | phosphoribosyl pyrophosphate synthetase 2 (PRPS2) pseudogene | 2.5850 | 0.0001 | |
| 4 | ENSG00000234748 | ADP-ribosylation factor-like 5 (ARL5) pseudogene | 2.5850 | 0.0001 | |
| 5 | ENSG00000249111 | novel transcript | 2.5850 | 0.0001 | |
| 7 | ENSG00000228519 | RAN binding protein 1 pseudogene | 2.5705 | 0.0000 | |
| 8 | ENSG00000229638 | RPL4P4 | ribosomal protein L4 pseudogene 4 | 2.5695 | 0.0000 |
| 9 | ENSG00000253722 | novel transcript | 2.5572 | 0.0000 | |
| 10 | ENSG00000178645 | C10orf53 | chromosome 10 open reading frame 53 | 2.5000 | 0.0000 |
| 63332 | ENSG00000200303 | RNU6-940P | RNA, U6 small nuclear 940, pseudogene | -2.3764 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000177839 | PCDHB9 | protocadherin beta 9 | -2.3804 | 0.0000 |
| 63340 | ENSG00000185168 | LINC00482 | long intergenic non-protein coding RNA 482 | -2.3786 | 0.0000 |
| 63338 | ENSG00000202502 | RNA5SP151 | RNA, 5S ribosomal pseudogene 151 | -2.3778 | 0.0000 |
| 63337 | ENSG00000144711 | IQSEC1 | IQ motif and Sec7 domain 1 | -2.3775 | 0.0000 |
| 63336 | ENSG00000161180 | CCDC116 | coiled-coil domain containing 116 | -2.3773 | 0.0000 |
| 63335 | ENSG00000204128 | C2orf72 | chromosome 2 open reading frame 72 | -2.3767 | 0.0000 |
| 63334 | ENSG00000275924 | MIR6807 | microRNA 6807 | -2.3766 | 0.0000 |
| 63333 | ENSG00000233347 | ERP29P1 | endoplasmic reticulum lumenal protein 29 pseudogene 1 | -2.3765 | 0.0000 |
| 63332 | ENSG00000200303 | RNU6-940P | RNA, U6 small nuclear 940, pseudogene | -2.3764 | 0.0000 |
| 10 | ENSG00000178645 | C10orf53 | chromosome 10 open reading frame 53 | 2.5000 | 0.0000 |
