Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773765

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773765


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M392Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202398 RNU6-61P RNA, U6 small nuclear 61, pseudogene 2.8074 0.0000
2 ENSG00000230847 OCLNP1 OCLN pseudogene 1 2.5850 0.0001
3 ENSG00000234269 phosphoribosyl pyrophosphate synthetase 2 (PRPS2) pseudogene 2.5850 0.0001
4 ENSG00000234748 ADP-ribosylation factor-like 5 (ARL5) pseudogene 2.5850 0.0001
5 ENSG00000249111 novel transcript 2.5850 0.0001
7 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.5705 0.0000
8 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.5695 0.0000
9 ENSG00000253722 novel transcript 2.5572 0.0000
10 ENSG00000178645 C10orf53 chromosome 10 open reading frame 53 2.5000 0.0000
63119 ENSG00000241458 RPL7P19 ribosomal protein L7 pseudogene 19 -2.3075 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000113396 SLC27A6 solute carrier family 27 member 6 -2.3108 0.0000
63127 ENSG00000200169 RNU5D-1 RNA, U5D small nuclear 1 -2.3105 0.0000
63126 ENSG00000284265 MIR4683 microRNA 4683 -2.3103 0.0000
63125 ENSG00000141096 DPEP3 dipeptidase 3 -2.3096 0.0000
63124 ENSG00000156486 KCNS2 potassium voltage-gated channel modifier subfamily S member 2 -2.3091 0.0000
63123 ENSG00000132603 NIP7 nucleolar pre-rRNA processing protein NIP7 -2.3088 0.0000
63122 ENSG00000279970 TEC -2.3084 0.0000
63121 ENSG00000144655 CSRNP1 cysteine and serine rich nuclear protein 1 -2.3081 0.0000
63120 ENSG00000008517 IL32 interleukin 32 -2.3079 0.0000
63119 ENSG00000241458 RPL7P19 ribosomal protein L7 pseudogene 19 -2.3075 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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