Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773765
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773765
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M392
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000202398
RNU6-61P
RNA, U6 small nuclear 61, pseudogene
2.8074
0.0000
2
ENSG00000230847
OCLNP1
OCLN pseudogene 1
2.5850
0.0001
3
ENSG00000234269
phosphoribosyl pyrophosphate synthetase 2 (PRPS2) pseudogene
2.5850
0.0001
4
ENSG00000234748
ADP-ribosylation factor-like 5 (ARL5) pseudogene
2.5850
0.0001
5
ENSG00000249111
novel transcript
2.5850
0.0001
7
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
2.5705
0.0000
8
ENSG00000229638
RPL4P4
ribosomal protein L4 pseudogene 4
2.5695
0.0000
9
ENSG00000253722
novel transcript
2.5572
0.0000
10
ENSG00000178645
C10orf53
chromosome 10 open reading frame 53
2.5000
0.0000
63119
ENSG00000241458
RPL7P19
ribosomal protein L7 pseudogene 19
-2.3075
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000113396
SLC27A6
solute carrier family 27 member 6
-2.3108
0.0000
63127
ENSG00000200169
RNU5D-1
RNA, U5D small nuclear 1
-2.3105
0.0000
63126
ENSG00000284265
MIR4683
microRNA 4683
-2.3103
0.0000
63125
ENSG00000141096
DPEP3
dipeptidase 3
-2.3096
0.0000
63124
ENSG00000156486
KCNS2
potassium voltage-gated channel modifier subfamily S member 2
-2.3091
0.0000
63123
ENSG00000132603
NIP7
nucleolar pre-rRNA processing protein NIP7
-2.3088
0.0000
63122
ENSG00000279970
TEC
-2.3084
0.0000
63121
ENSG00000144655
CSRNP1
cysteine and serine rich nuclear protein 1
-2.3081
0.0000
63120
ENSG00000008517
IL32
interleukin 32
-2.3079
0.0000
63119
ENSG00000241458
RPL7P19
ribosomal protein L7 pseudogene 19
-2.3075
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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