Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773765

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773765 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M392	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000202398	RNU6-61P	RNA, U6 small nuclear 61, pseudogene	2.8074	0.0000
2	ENSG00000230847	OCLNP1	OCLN pseudogene 1	2.5850	0.0001
3	ENSG00000234269		phosphoribosyl pyrophosphate synthetase 2 (PRPS2) pseudogene	2.5850	0.0001
4	ENSG00000234748		ADP-ribosylation factor-like 5 (ARL5) pseudogene	2.5850	0.0001
5	ENSG00000249111		novel transcript	2.5850	0.0001
7	ENSG00000228519	RANBP1P1	RANBP1 pseudogene 1	2.5705	0.0000
8	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	2.5695	0.0000
9	ENSG00000253722		novel transcript	2.5572	0.0000
10	ENSG00000178645	C10orf53	chromosome 10 open reading frame 53	2.5000	0.0000
63119	ENSG00000241458	RPL7P19	ribosomal protein L7 pseudogene 19	-2.3075	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000113396	SLC27A6	solute carrier family 27 member 6	-2.3108	0.0000
63127	ENSG00000200169	RNU5D-1	RNA, U5D small nuclear 1	-2.3105	0.0000
63126	ENSG00000284265	MIR4683	microRNA 4683	-2.3103	0.0000
63125	ENSG00000141096	DPEP3	dipeptidase 3	-2.3096	0.0000
63124	ENSG00000156486	KCNS2	potassium voltage-gated channel modifier subfamily S member 2	-2.3091	0.0000
63123	ENSG00000132603	NIP7	nucleolar pre-rRNA processing protein NIP7	-2.3088	0.0000
63122	ENSG00000279970		TEC	-2.3084	0.0000
63121	ENSG00000144655	CSRNP1	cysteine and serine rich nuclear protein 1	-2.3081	0.0000
63120	ENSG00000008517	IL32	interleukin 32	-2.3079	0.0000
63119	ENSG00000241458	RPL7P19	ribosomal protein L7 pseudogene 19	-2.3075	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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