SHOGoiN Cell Methylome: GSM2773765

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773765


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M392Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202398 RNU6-61P RNA, U6 small nuclear 61, pseudogene 2.8074 0.0000
2 ENSG00000230847 OCLNP1 OCLN pseudogene 1 2.5850 0.0001
3 ENSG00000234269 phosphoribosyl pyrophosphate synthetase 2 (PRPS2) pseudogene 2.5850 0.0001
4 ENSG00000234748 ADP-ribosylation factor-like 5 (ARL5) pseudogene 2.5850 0.0001
5 ENSG00000249111 novel transcript 2.5850 0.0001
7 ENSG00000228519 RAN binding protein 1 pseudogene 2.5705 0.0000
8 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.5695 0.0000
9 ENSG00000253722 novel transcript 2.5572 0.0000
10 ENSG00000178645 C10orf53 chromosome 10 open reading frame 53 2.5000 0.0000
63332 ENSG00000200303 RNU6-940P RNA, U6 small nuclear 940, pseudogene -2.3764 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000177839 PCDHB9 protocadherin beta 9 -2.3804 0.0000
63340 ENSG00000185168 LINC00482 long intergenic non-protein coding RNA 482 -2.3786 0.0000
63338 ENSG00000202502 RNA5SP151 RNA, 5S ribosomal pseudogene 151 -2.3778 0.0000
63337 ENSG00000144711 IQSEC1 IQ motif and Sec7 domain 1 -2.3775 0.0000
63336 ENSG00000161180 CCDC116 coiled-coil domain containing 116 -2.3773 0.0000
63335 ENSG00000204128 C2orf72 chromosome 2 open reading frame 72 -2.3767 0.0000
63334 ENSG00000275924 MIR6807 microRNA 6807 -2.3766 0.0000
63333 ENSG00000233347 ERP29P1 endoplasmic reticulum lumenal protein 29 pseudogene 1 -2.3765 0.0000
63332 ENSG00000200303 RNU6-940P RNA, U6 small nuclear 940, pseudogene -2.3764 0.0000
10 ENSG00000178645 C10orf53 chromosome 10 open reading frame 53 2.5000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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