SHOGoiN Cell Methylome: GSM2773766
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773766 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M393 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000200879 | SNORD14E | small nucleolar RNA, C/D box 14E | 4.2297 | 0.0000 |
| 2 | ENSG00000229060 | novel pseudogene | 3.9069 | 0.0000 | |
| 3 | ENSG00000251562 | MALAT1 | metastasis associated lung adenocarcinoma transcript 1 | 3.8971 | 0.0000 |
| 4 | ENSG00000278217 | NA | 3.8971 | 0.0000 | |
| 5 | ENSG00000265401 | novel transcript | 3.7987 | 0.0000 | |
| 7 | ENSG00000217889 | KRT18P48 | keratin 18 pseudogene 48 | 3.7845 | 0.0000 |
| 9 | ENSG00000265095 | FTLP12 | ferritin light chain pseudogene 12 | 3.7495 | 0.0000 |
| 10 | ENSG00000075624 | ACTB | actin beta | 3.7169 | 0.0000 |
| 63332 | ENSG00000238212 | LINC02096 | long intergenic non-protein coding RNA 2096 | -1.1462 | 0.0296 |
| 63333 | ENSG00000262664 | OVCA2 | OVCA2 serine hydrolase domain containing | -1.1478 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000099290 | WASHC2A | WASH complex subunit 2A | -1.1695 | 0.0000 |
| 63340 | ENSG00000176055 | MBLAC2 | metallo-beta-lactamase domain containing 2 | -1.1629 | 0.0000 |
| 63339 | ENSG00000113356 | POLR3G | RNA polymerase III subunit G | -1.1629 | 0.0000 |
| 63338 | ENSG00000105202 | FBL | fibrillarin | -1.1610 | 0.0333 |
| 63337 | ENSG00000127603 | MACF1 | microtubule actin crosslinking factor 1 | -1.1576 | 0.0000 |
| 63336 | ENSG00000271737 | novel transcript | -1.1575 | 0.0000 | |
| 63335 | ENSG00000263756 | novel transcript, antisense to BRD2 | -1.1569 | 0.0000 | |
| 63334 | ENSG00000169851 | PCDH7 | protocadherin 7 | -1.1556 | 0.0000 |
| 63333 | ENSG00000262664 | OVCA2 | OVCA2 serine hydrolase domain containing | -1.1478 | 0.0000 |
| 63332 | ENSG00000238212 | LINC02096 | long intergenic non-protein coding RNA 2096 | -1.1462 | 0.0296 |
