Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773766
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773766
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M393
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000200879
SNORD14E
small nucleolar RNA, C/D box 14E
4.2297
0.0000
2
ENSG00000229060
novel pseudogene
3.9069
0.0000
3
ENSG00000251562
MALAT1
metastasis associated lung adenocarcinoma transcript 1
3.8971
0.0000
4
ENSG00000278217
NA
3.8971
0.0000
5
ENSG00000265401
novel transcript
3.7987
0.0000
7
ENSG00000217889
KRT18P48
keratin 18 pseudogene 48
3.7845
0.0000
9
ENSG00000265095
FTLP12
ferritin light chain pseudogene 12
3.7495
0.0000
10
ENSG00000075624
ACTB
actin beta
3.7169
0.0000
63119
ENSG00000280153
TEC
-1.0000
0.0598
63121
ENSG00000280254
TEC
-1.0000
0.0146
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000280405
novel transcript
-1.0000
0.0018
63127
ENSG00000280377
tec
-1.0000
0.0598
63126
ENSG00000280369
tec
-1.0000
0.4945
63125
ENSG00000280354
novel transcript
-1.0000
0.0598
63124
ENSG00000280335
TEC
-1.0000
0.0296
63123
ENSG00000280334
TEC
-1.0000
0.2445
63122
ENSG00000280268
TEC
-1.0000
0.0146
63121
ENSG00000280254
TEC
-1.0000
0.0146
63119
ENSG00000280153
TEC
-1.0000
0.0598
10
ENSG00000075624
ACTB
actin beta
3.7169
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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