SHOGoiN Cell Methylome: GSM2773766

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773766


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M393Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200879 SNORD14E small nucleolar RNA, C/D box 14E 4.2297 0.0000
2 ENSG00000229060 novel pseudogene 3.9069 0.0000
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 3.8971 0.0000
4 ENSG00000278217 NA 3.8971 0.0000
5 ENSG00000265401 novel transcript 3.7987 0.0000
7 ENSG00000217889 KRT18P48 keratin 18 pseudogene 48 3.7845 0.0000
9 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 3.7495 0.0000
10 ENSG00000075624 ACTB actin beta 3.7169 0.0000
63332 ENSG00000238212 LINC02096 long intergenic non-protein coding RNA 2096 -1.1462 0.0296
63333 ENSG00000262664 OVCA2 OVCA2 serine hydrolase domain containing -1.1478 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000099290 WASHC2A WASH complex subunit 2A -1.1695 0.0000
63340 ENSG00000176055 MBLAC2 metallo-beta-lactamase domain containing 2 -1.1629 0.0000
63339 ENSG00000113356 POLR3G RNA polymerase III subunit G -1.1629 0.0000
63338 ENSG00000105202 FBL fibrillarin -1.1610 0.0333
63337 ENSG00000127603 MACF1 microtubule actin crosslinking factor 1 -1.1576 0.0000
63336 ENSG00000271737 novel transcript -1.1575 0.0000
63335 ENSG00000263756 novel transcript, antisense to BRD2 -1.1569 0.0000
63334 ENSG00000169851 PCDH7 protocadherin 7 -1.1556 0.0000
63333 ENSG00000262664 OVCA2 OVCA2 serine hydrolase domain containing -1.1478 0.0000
63332 ENSG00000238212 LINC02096 long intergenic non-protein coding RNA 2096 -1.1462 0.0296

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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