Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773767

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773767


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M394Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254202 novel transcript 4.3219 0.0000
2 ENSG00000279635 tec 3.7004 0.0000
3 ENSG00000229600 novel transcript 3.0000 0.0000
4 ENSG00000199515 Y RNA 2.9203 0.0000
5 ENSG00000213512 GBP7 guanylate binding protein 7 2.8074 0.0000
6 ENSG00000227240 novel transcript 2.8074 0.0000
7 ENSG00000275647 zinc finger protein 93 (ZNF93) pseudogene 2.8074 0.0000
8 ENSG00000249752 novel transcript 2.7925 0.0000
9 ENSG00000229608 GOLGA2P4 GOLGA2 pseudogene 4 2.6634 0.0000
10 ENSG00000234009 RPL5P34 ribosomal protein L5 pseudogene 34 2.6634 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000171004 HS6ST2 heparan sulfate 6-O-sulfotransferase 2 -2.5229 0.0000
63127 ENSG00000259849 VENTXP1 VENT homeobox pseudogene 1 -2.5226 0.0000
63126 ENSG00000153976 HS3ST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 -2.5226 0.0000
63125 ENSG00000212572 RNU6-903P RNA, U6 small nuclear 903, pseudogene -2.5226 0.0000
63124 ENSG00000279068 novel transcript -2.5224 0.0000
63123 ENSG00000272674 PCDHB16 protocadherin beta 16 -2.5224 0.0000
63122 ENSG00000214070 MANEALP1 MANEAL pseudogene 1 -2.5219 0.0021
63121 ENSG00000165895 ARHGAP42 Rho GTPase activating protein 42 -2.5216 0.0000
63120 ENSG00000260285 novel transcript, antisense to TRMT61A -2.5211 0.0000
63119 ENSG00000148200 NR6A1 nuclear receptor subfamily 6 group A member 1 -2.5207 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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