SHOGoiN Cell Methylome: GSM2773767
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773767 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M394 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000254202 | novel transcript | 4.3219 | 0.0000 | |
| 2 | ENSG00000279635 | tec | 3.7004 | 0.0000 | |
| 3 | ENSG00000229600 | novel transcript | 3.0000 | 0.0000 | |
| 4 | ENSG00000199515 | NA | 2.9203 | 0.0000 | |
| 5 | ENSG00000213512 | GBP7 | guanylate binding protein 7 | 2.8074 | 0.0000 |
| 6 | ENSG00000227240 | novel transcript | 2.8074 | 0.0000 | |
| 7 | ENSG00000275647 | zinc finger protein 93 (ZNF93) pseudogene | 2.8074 | 0.0000 | |
| 8 | ENSG00000249752 | novel transcript | 2.7925 | 0.0000 | |
| 9 | ENSG00000229608 | GOLGA2P4 | GOLGA2 pseudogene 4 | 2.6634 | 0.0000 |
| 10 | ENSG00000234009 | RPL5P34 | ribosomal protein L5 pseudogene 34 | 2.6634 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000106511 | MEOX2 | mesenchyme homeobox 2 | -2.5914 | 0.0000 |
| 63340 | ENSG00000163811 | WDR43 | WD repeat domain 43 | -2.5912 | 0.0000 |
| 63339 | ENSG00000255867 | DENND5B-AS1 | DENND5B antisense RNA 1 | -2.5902 | 0.0000 |
| 63338 | ENSG00000241014 | novel platelet-activating factor receptor family pseudogene | -2.5895 | 0.0000 | |
| 63337 | ENSG00000264171 | MIR4305 | microRNA 4305 | -2.5892 | 0.0000 |
| 63336 | ENSG00000234456 | MAGI2-AS3 | MAGI2 antisense RNA 3 | -2.5886 | 0.0000 |
| 63335 | ENSG00000250786 | SNHG18 | small nucleolar RNA host gene 18 | -2.5885 | 0.0000 |
| 63334 | ENSG00000236130 | PTCSC2 | papillary thyroid carcinoma susceptibility candidate 2 | -2.5880 | 0.0000 |
| 63333 | ENSG00000272141 | novel transcript | -2.5865 | 0.0000 | |
| 63332 | ENSG00000177374 | HIC1 | HIC ZBTB transcriptional repressor 1 | -2.5863 | 0.0000 |
