Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773767
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773767
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M394
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000254202
novel transcript
4.3219
0.0000
2
ENSG00000279635
tec
3.7004
0.0000
3
ENSG00000229600
novel transcript
3.0000
0.0000
4
ENSG00000199515
Y RNA
2.9203
0.0000
5
ENSG00000213512
GBP7
guanylate binding protein 7
2.8074
0.0000
6
ENSG00000227240
novel transcript
2.8074
0.0000
7
ENSG00000275647
zinc finger protein 93 (ZNF93) pseudogene
2.8074
0.0000
8
ENSG00000249752
novel transcript
2.7925
0.0000
9
ENSG00000229608
GOLGA2P4
GOLGA2 pseudogene 4
2.6634
0.0000
10
ENSG00000234009
RPL5P34
ribosomal protein L5 pseudogene 34
2.6634
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000171004
HS6ST2
heparan sulfate 6-O-sulfotransferase 2
-2.5229
0.0000
63127
ENSG00000259849
VENTXP1
VENT homeobox pseudogene 1
-2.5226
0.0000
63126
ENSG00000153976
HS3ST3A1
heparan sulfate-glucosamine 3-sulfotransferase 3A1
-2.5226
0.0000
63125
ENSG00000212572
RNU6-903P
RNA, U6 small nuclear 903, pseudogene
-2.5226
0.0000
63124
ENSG00000279068
novel transcript
-2.5224
0.0000
63123
ENSG00000272674
PCDHB16
protocadherin beta 16
-2.5224
0.0000
63122
ENSG00000214070
MANEALP1
MANEAL pseudogene 1
-2.5219
0.0021
63121
ENSG00000165895
ARHGAP42
Rho GTPase activating protein 42
-2.5216
0.0000
63120
ENSG00000260285
novel transcript, antisense to TRMT61A
-2.5211
0.0000
63119
ENSG00000148200
NR6A1
nuclear receptor subfamily 6 group A member 1
-2.5207
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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