Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773767

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773767 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M394	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000254202		novel transcript	4.3219	0.0000
2	ENSG00000279635		tec	3.7004	0.0000
3	ENSG00000229600		novel transcript	3.0000	0.0000
4	ENSG00000199515		Y RNA	2.9203	0.0000
5	ENSG00000213512	GBP7	guanylate binding protein 7	2.8074	0.0000
6	ENSG00000227240		novel transcript	2.8074	0.0000
7	ENSG00000275647		zinc finger protein 93 (ZNF93) pseudogene	2.8074	0.0000
8	ENSG00000249752		novel transcript	2.7925	0.0000
9	ENSG00000229608	GOLGA2P4	GOLGA2 pseudogene 4	2.6634	0.0000
10	ENSG00000234009	RPL5P34	ribosomal protein L5 pseudogene 34	2.6634	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000171004	HS6ST2	heparan sulfate 6-O-sulfotransferase 2	-2.5229	0.0000
63127	ENSG00000259849	VENTXP1	VENT homeobox pseudogene 1	-2.5226	0.0000
63126	ENSG00000153976	HS3ST3A1	heparan sulfate-glucosamine 3-sulfotransferase 3A1	-2.5226	0.0000
63125	ENSG00000212572	RNU6-903P	RNA, U6 small nuclear 903, pseudogene	-2.5226	0.0000
63124	ENSG00000279068		novel transcript	-2.5224	0.0000
63123	ENSG00000272674	PCDHB16	protocadherin beta 16	-2.5224	0.0000
63122	ENSG00000214070	MANEALP1	MANEAL pseudogene 1	-2.5219	0.0021
63121	ENSG00000165895	ARHGAP42	Rho GTPase activating protein 42	-2.5216	0.0000
63120	ENSG00000260285		novel transcript, antisense to TRMT61A	-2.5211	0.0000
63119	ENSG00000148200	NR6A1	nuclear receptor subfamily 6 group A member 1	-2.5207	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...