Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773768

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773768 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M395	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000248927		novel transcript	3.0000	0.0000
2	ENSG00000234767	LINC01052	long intergenic non-protein coding RNA 1052	2.8074	0.0000
3	ENSG00000270753		phosphoribosyl pyrophosphate synthetase 1-like 1, pseudogene	2.7709	0.0000
4	ENSG00000235450		novel transcript	2.5850	0.0001
5	ENSG00000241018	RCC2P5	regulator of chromosome condensation 2 pseudogene 5	2.5850	0.0000
6	ENSG00000255960		F-box only protein 3 (FBXO3) pseudogene	2.5850	0.0001
7	ENSG00000263616	RN7SL178P	RNA, 7SL, cytoplasmic 178, pseudogene	2.5850	0.0000
8	ENSG00000242120	MDFIC2	MyoD family inhibitor domain containing 2	2.5229	0.0000
9	ENSG00000250670		novel transcript	2.5192	0.0000
10	ENSG00000229728		novel transcript	2.4797	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000284525	MIR4687	microRNA 4687	-2.2395	0.0000
63127	ENSG00000092051	JPH4	junctophilin 4	-2.2395	0.0000
63126	ENSG00000205213	LGR4	leucine rich repeat containing G protein-coupled receptor 4	-2.2388	0.0000
63125	ENSG00000253312		ankyrin repeat domain (ANKRD) pseudogene	-2.2387	0.0000
63124	ENSG00000160214	RRP1	ribosomal RNA processing 1	-2.2386	0.0000
63123	ENSG00000225335		novel transcript	-2.2382	0.0000
63122	ENSG00000215193	PEX26	peroxisomal biogenesis factor 26	-2.2382	0.0000
63121	ENSG00000222987	RN7SKP68	RN7SK pseudogene 68	-2.2380	0.0000
63120	ENSG00000226757		uncharacterized LOC100192379	-2.2378	0.0000
63119	ENSG00000231530		novel transcript	-2.2377	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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