Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773768

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773768


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M395Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248927 novel transcript 3.0000 0.0000
2 ENSG00000234767 LINC01052 long intergenic non-protein coding RNA 1052 2.8074 0.0000
3 ENSG00000270753 phosphoribosyl pyrophosphate synthetase 1-like 1, pseudogene 2.7709 0.0000
4 ENSG00000235450 novel transcript 2.5850 0.0001
5 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.5850 0.0000
6 ENSG00000255960 F-box only protein 3 (FBXO3) pseudogene 2.5850 0.0001
7 ENSG00000263616 RN7SL178P RNA, 7SL, cytoplasmic 178, pseudogene 2.5850 0.0000
8 ENSG00000242120 MDFIC2 MyoD family inhibitor domain containing 2 2.5229 0.0000
9 ENSG00000250670 novel transcript 2.5192 0.0000
10 ENSG00000229728 novel transcript 2.4797 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000284525 MIR4687 microRNA 4687 -2.2395 0.0000
63127 ENSG00000092051 JPH4 junctophilin 4 -2.2395 0.0000
63126 ENSG00000205213 LGR4 leucine rich repeat containing G protein-coupled receptor 4 -2.2388 0.0000
63125 ENSG00000253312 ankyrin repeat domain (ANKRD) pseudogene -2.2387 0.0000
63124 ENSG00000160214 RRP1 ribosomal RNA processing 1 -2.2386 0.0000
63123 ENSG00000225335 novel transcript -2.2382 0.0000
63122 ENSG00000215193 PEX26 peroxisomal biogenesis factor 26 -2.2382 0.0000
63121 ENSG00000222987 RN7SKP68 RN7SK pseudogene 68 -2.2380 0.0000
63120 ENSG00000226757 uncharacterized LOC100192379 -2.2378 0.0000
63119 ENSG00000231530 novel transcript -2.2377 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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