Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773768
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773768
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M395
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000248927
novel transcript
3.0000
0.0000
2
ENSG00000234767
LINC01052
long intergenic non-protein coding RNA 1052
2.8074
0.0000
3
ENSG00000270753
phosphoribosyl pyrophosphate synthetase 1-like 1, pseudogene
2.7709
0.0000
4
ENSG00000235450
novel transcript
2.5850
0.0001
5
ENSG00000241018
RCC2P5
regulator of chromosome condensation 2 pseudogene 5
2.5850
0.0000
6
ENSG00000255960
F-box only protein 3 (FBXO3) pseudogene
2.5850
0.0001
7
ENSG00000263616
RN7SL178P
RNA, 7SL, cytoplasmic 178, pseudogene
2.5850
0.0000
8
ENSG00000242120
MDFIC2
MyoD family inhibitor domain containing 2
2.5229
0.0000
9
ENSG00000250670
novel transcript
2.5192
0.0000
10
ENSG00000229728
novel transcript
2.4797
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000284525
MIR4687
microRNA 4687
-2.2395
0.0000
63127
ENSG00000092051
JPH4
junctophilin 4
-2.2395
0.0000
63126
ENSG00000205213
LGR4
leucine rich repeat containing G protein-coupled receptor 4
-2.2388
0.0000
63125
ENSG00000253312
ankyrin repeat domain (ANKRD) pseudogene
-2.2387
0.0000
63124
ENSG00000160214
RRP1
ribosomal RNA processing 1
-2.2386
0.0000
63123
ENSG00000225335
novel transcript
-2.2382
0.0000
63122
ENSG00000215193
PEX26
peroxisomal biogenesis factor 26
-2.2382
0.0000
63121
ENSG00000222987
RN7SKP68
RN7SK pseudogene 68
-2.2380
0.0000
63120
ENSG00000226757
uncharacterized LOC100192379
-2.2378
0.0000
63119
ENSG00000231530
novel transcript
-2.2377
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...