SHOGoiN Cell Methylome: GSM2773768
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773768 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M395 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000248927 | novel transcript | 3.0000 | 0.0000 | |
| 2 | ENSG00000234767 | LINC01052 | long intergenic non-protein coding RNA 1052 | 2.8074 | 0.0000 |
| 3 | ENSG00000270753 | phosphoribosyl pyrophosphate synthetase 1-like 1, pseudogene | 2.7709 | 0.0000 | |
| 4 | ENSG00000235450 | novel transcript | 2.5850 | 0.0001 | |
| 5 | ENSG00000241018 | RCC2P5 | regulator of chromosome condensation 2 pseudogene 5 | 2.5850 | 0.0000 |
| 6 | ENSG00000255960 | F-box only protein 3 (FBXO3) pseudogene | 2.5850 | 0.0001 | |
| 7 | ENSG00000263616 | RN7SL178P | RNA, 7SL, cytoplasmic 178, pseudogene | 2.5850 | 0.0000 |
| 8 | ENSG00000242120 | MDFIC2 | MyoD family inhibitor domain containing 2 | 2.5229 | 0.0000 |
| 9 | ENSG00000250670 | novel transcript | 2.5192 | 0.0000 | |
| 10 | ENSG00000229728 | novel transcript | 2.4797 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000186440 | OR6P1 | olfactory receptor family 6 subfamily P member 1 | -2.3219 | 1.0000 |
| 63340 | ENSG00000106038 | EVX1 | even-skipped homeobox 1 | -2.3217 | 0.0000 |
| 63339 | ENSG00000278619 | MRM1 | mitochondrial rRNA methyltransferase 1 | -2.3216 | 0.0000 |
| 63338 | ENSG00000211769 | TRBJ2-5 | T cell receptor beta joining 2-5 | -2.3204 | 0.0000 |
| 63337 | ENSG00000198108 | CHSY3 | chondroitin sulfate synthase 3 | -2.3200 | 0.0000 |
| 63336 | ENSG00000100744 | GSKIP | GSK3B interacting protein | -2.3191 | 0.0000 |
| 63335 | ENSG00000144802 | NFKBIZ | NFKB inhibitor zeta | -2.3190 | 0.0000 |
| 63334 | ENSG00000164074 | ABHD18 | abhydrolase domain containing 18 | -2.3186 | 0.0000 |
| 63333 | ENSG00000266677 | novel transcript | -2.3180 | 0.0000 | |
| 63332 | ENSG00000284197 | MIR658 | microRNA 658 | -2.3180 | 0.0000 |
