SHOGoiN Cell Methylome: GSM2773768

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773768


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M395Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248927 novel transcript 3.0000 0.0000
2 ENSG00000234767 LINC01052 long intergenic non-protein coding RNA 1052 2.8074 0.0000
3 ENSG00000270753 phosphoribosyl pyrophosphate synthetase 1-like 1, pseudogene 2.7709 0.0000
4 ENSG00000235450 novel transcript 2.5850 0.0001
5 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.5850 0.0000
6 ENSG00000255960 F-box only protein 3 (FBXO3) pseudogene 2.5850 0.0001
7 ENSG00000263616 RN7SL178P RNA, 7SL, cytoplasmic 178, pseudogene 2.5850 0.0000
8 ENSG00000242120 MDFIC2 MyoD family inhibitor domain containing 2 2.5229 0.0000
9 ENSG00000250670 novel transcript 2.5192 0.0000
10 ENSG00000229728 novel transcript 2.4797 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000186440 OR6P1 olfactory receptor family 6 subfamily P member 1 -2.3219 1.0000
63340 ENSG00000106038 EVX1 even-skipped homeobox 1 -2.3217 0.0000
63339 ENSG00000278619 MRM1 mitochondrial rRNA methyltransferase 1 -2.3216 0.0000
63338 ENSG00000211769 TRBJ2-5 T cell receptor beta joining 2-5 -2.3204 0.0000
63337 ENSG00000198108 CHSY3 chondroitin sulfate synthase 3 -2.3200 0.0000
63336 ENSG00000100744 GSKIP GSK3B interacting protein -2.3191 0.0000
63335 ENSG00000144802 NFKBIZ NFKB inhibitor zeta -2.3190 0.0000
63334 ENSG00000164074 ABHD18 abhydrolase domain containing 18 -2.3186 0.0000
63333 ENSG00000266677 novel transcript -2.3180 0.0000
63332 ENSG00000284197 MIR658 microRNA 658 -2.3180 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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