SHOGoiN Cell Methylome: GSM2773769

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773769


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M396Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 3.1699 0.0000
2 ENSG00000214942 novel transcript 3.0000 0.0000
3 ENSG00000223625 CYCSP32 CYCS pseudogene 32 3.0000 0.0000
4 ENSG00000224278 DEAD (Asp-Glu-Ala-As) box polypeptide 19 (DDX19) pseudogene 2.8074 0.0000
5 ENSG00000239395 novel protein 2.8074 0.0000
6 ENSG00000241128 OR14A2 olfactory receptor family 14 subfamily A member 2 2.8074 0.0000
7 ENSG00000252065 RNU6-864P RNA, U6 small nuclear 864, pseudogene 2.8074 0.0000
8 ENSG00000215399 HMGB3P7 high mobility group box 3 pseudogene 7 2.5850 0.0001
9 ENSG00000226126 PSMC1P12 proteasome 26S subunit, ATPase 1 pseudogene 12 2.5850 0.0000
10 ENSG00000226857 DUTP3 deoxyuridine triphosphatase pseudogene 3 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000100583 SAMD15 sterile alpha motif domain containing 15 -2.4634 0.0000
63340 ENSG00000180867 PDIA3P1 protein disulfide isomerase family A member 3 pseudogene 1 -2.4632 0.0000
63339 ENSG00000226501 USF1P1 upstream transcription factor 1 pseudogene 1 -2.4629 0.0000
63338 ENSG00000120837 NFYB nuclear transcription factor Y subunit beta -2.4628 0.0000
63337 ENSG00000165915 SLC39A13 solute carrier family 39 member 13 -2.4616 0.0000
63336 ENSG00000265982 Rho GTPase-activating protein 27-like protein pseudogene -2.4607 0.0000
63335 ENSG00000253715 novel transcript -2.4606 0.0000
63334 ENSG00000171189 GRIK1 glutamate ionotropic receptor kainate type subunit 1 -2.4605 0.0000
63333 ENSG00000105971 CAV2 caveolin 2 -2.4599 0.0000
63332 ENSG00000263126 novel transcript -2.4593 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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