Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773769

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773769


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M396Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 3.1699 0.0000
2 ENSG00000214942 novel transcript 3.0000 0.0000
3 ENSG00000223625 CYCSP32 CYCS pseudogene 32 3.0000 0.0000
4 ENSG00000224278 DEAD (Asp-Glu-Ala-As) box polypeptide 19 (DDX19) pseudogene 2.8074 0.0000
5 ENSG00000239395 novel protein 2.8074 0.0000
6 ENSG00000241128 OR14A2 olfactory receptor family 14 subfamily A member 2 2.8074 0.0000
7 ENSG00000252065 RNU6-864P RNA, U6 small nuclear 864, pseudogene 2.8074 0.0000
8 ENSG00000215399 HMGB3P7 high mobility group box 3 pseudogene 7 2.5850 0.0001
9 ENSG00000226126 PSMC1P12 proteasome 26S subunit, ATPase 1 pseudogene 12 2.5850 0.0000
10 ENSG00000226857 DUTP3 deoxyuridine triphosphatase pseudogene 3 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000139718 SETD1B SET domain containing 1B, histone lysine methyltransferase -2.3993 0.0000
63172 ENSG00000142961 MOB3C MOB kinase activator 3C -2.3992 0.0000
63171 ENSG00000227373 RABGAP1L-DT RABGAP1L divergent transcript -2.3990 0.0000
63170 ENSG00000177508 IRX3 iroquois homeobox 3 -2.3985 0.0000
63169 ENSG00000280346 mitochondrial ribosomal protein L51 (MRPL51) pseudogene -2.3977 0.0000
63168 ENSG00000244652 TM2 domain containing 1 (TM2D1) pseudogene -2.3976 0.0000
63167 ENSG00000278388 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 (GNGT1) pseudogene -2.3976 0.0009
63166 ENSG00000256879 novel transcript -2.3968 0.0000
63165 ENSG00000206669 Y RNA -2.3968 0.0000
63164 ENSG00000276045 ORAI1 ORAI calcium release-activated calcium modulator 1 -2.3967 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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