Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773769

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773769


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M396Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 3.1699 0.0000
2 ENSG00000214942 novel transcript 3.0000 0.0000
3 ENSG00000223625 CYCSP32 CYCS pseudogene 32 3.0000 0.0000
4 ENSG00000224278 DEAD (Asp-Glu-Ala-As) box polypeptide 19 (DDX19) pseudogene 2.8074 0.0000
5 ENSG00000239395 novel protein 2.8074 0.0000
6 ENSG00000241128 OR14A2 olfactory receptor family 14 subfamily A member 2 2.8074 0.0000
7 ENSG00000252065 RNU6-864P RNA, U6 small nuclear 864, pseudogene 2.8074 0.0000
8 ENSG00000215399 HMGB3P7 high mobility group box 3 pseudogene 7 2.5850 0.0001
9 ENSG00000226126 PSMC1P12 proteasome 26S subunit, ATPase 1 pseudogene 12 2.5850 0.0000
10 ENSG00000226857 DUTP3 deoxyuridine triphosphatase pseudogene 3 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000164823 OSGIN2 oxidative stress induced growth inhibitor family member 2 -2.4145 0.0000
63220 ENSG00000165185 KIAA1958 KIAA1958 -2.4144 0.0000
63219 ENSG00000261580 ENPP7P13 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13 -2.4139 0.0000
63218 ENSG00000283303 novel transcript -2.4132 0.0042
63217 ENSG00000254298 novel transcript -2.4126 0.0000
63216 ENSG00000170775 GPR37 G protein-coupled receptor 37 -2.4120 0.0000
63215 ENSG00000168077 SCARA3 scavenger receptor class A member 3 -2.4118 0.0000
63214 ENSG00000228594 FNDC10 fibronectin type III domain containing 10 -2.4114 0.0000
63213 ENSG00000258413 novel transcript -2.4114 0.0000
63212 ENSG00000164379 FOXQ1 forkhead box Q1 -2.4110 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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