SHOGoiN Cell Methylome: GSM2773770

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773770


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M397Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000174448 STARD6 StAR related lipid transfer domain containing 6 2.8774 0.0000
2 ENSG00000206698 RNU1-73P RNA, U1 small nuclear 73, pseudogene 2.3219 0.0000
3 ENSG00000222313 RN7SKP267 RN7SK pseudogene 267 2.3219 0.0002
4 ENSG00000226213 UBQLN4P2 ubiquilin 4 pseudogene 2 2.3219 0.0000
5 ENSG00000271385 transmembrane protein 230 (TMEM230) pseudogene 2.3219 0.0000
6 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1246 0.0000
7 ENSG00000235552 RPL6P27 ribosomal protein L6 pseudogene 27 2.1207 0.0000
8 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1141 0.0000
9 ENSG00000276945 protocadherin 19 (PCDH19) pseudogene 2.0728 0.0000
10 ENSG00000227676 LINC01068 long intergenic non-protein coding RNA 1068 2.0572 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000277532 tumor necrosis factor receptor superfamily, member 13B (TNFRSF13B) pseudogene -2.1639 0.0000
63340 ENSG00000120055 C10orf95 chromosome 10 open reading frame 95 -2.1634 0.0000
63339 ENSG00000269072 novel transcript, antisense to SIGLEC7 and SIGLEC17P -2.1630 0.0000
63338 ENSG00000104660 LEPROTL1 leptin receptor overlapping transcript like 1 -2.1627 0.0000
63337 ENSG00000177606 JUN Jun proto-oncogene, AP-1 transcription factor subunit -2.1616 0.0000
63336 ENSG00000130204 TOMM40 translocase of outer mitochondrial membrane 40 -2.1614 0.0000
63335 ENSG00000270339 PPIAL4H peptidylprolyl isomerase A like 4H -2.1610 1.0000
63334 ENSG00000182831 C16orf72 chromosome 16 open reading frame 72 -2.1609 0.0000
63333 ENSG00000198598 MMP17 matrix metallopeptidase 17 -2.1607 0.0000
63332 ENSG00000252739 RNU7-151P RNA, U7 small nuclear 151 pseudogene -2.1606 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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