Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773770

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773770


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M397Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000174448 STARD6 StAR related lipid transfer domain containing 6 2.8774 0.0000
2 ENSG00000206698 RNU1-73P RNA, U1 small nuclear 73, pseudogene 2.3219 0.0000
3 ENSG00000222313 RN7SKP267 RN7SK pseudogene 267 2.3219 0.0002
4 ENSG00000226213 UBQLN4P2 ubiquilin 4 pseudogene 2 2.3219 0.0000
5 ENSG00000271385 transmembrane protein 230 (TMEM230) pseudogene 2.3219 0.0000
6 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1246 0.0000
7 ENSG00000235552 RPL6P27 ribosomal protein L6 pseudogene 27 2.1207 0.0000
8 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1141 0.0000
9 ENSG00000276945 protocadherin 19 (PCDH19) pseudogene 2.0728 0.0000
10 ENSG00000227676 LINC01068 long intergenic non-protein coding RNA 1068 2.0572 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000232889 tandem C2 domains, nuclear (TC2N) pseudogene -2.0940 0.0000
63127 ENSG00000266522 chromosome 9 open reading frame 86 pseudogene -2.0937 0.0000
63126 ENSG00000246740 PLA2G4E-AS1 PLA2G4E antisense RNA 1 -2.0936 0.0000
63125 ENSG00000184811 TRARG1 trafficking regulator of GLUT4 (SLC2A4) 1 -2.0935 0.0000
63124 ENSG00000168350 DEGS2 delta 4-desaturase, sphingolipid 2 -2.0934 0.0000
63123 ENSG00000251604 LINC01385 long intergenic non-protein coding RNA 1385 -2.0934 0.0000
63122 ENSG00000135045 C9orf40 chromosome 9 open reading frame 40 -2.0933 0.0000
63121 ENSG00000254906 novel transcript, antisense to NELL1 -2.0931 0.0000
63120 ENSG00000225343 RPL21P66 ribosomal protein L21 pseudogene 66 -2.0930 0.0000
63119 ENSG00000284224 MIR937 microRNA 937 -2.0923 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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